Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U12120 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 4.9e-15 83.2 39 100.0
AL5G25000 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 1.1e-11 72.0 33 97.0
AT3G46210 Arabidopsis thaliana HOM05D005175 ORTHO05D006302 1.1e-11 72.0 33 97.0
Carub.0005s1205 Capsella rubella HOM05D005175 ORTHO05D006302 1.1e-11 72.0 33 97.0
CARHR154650 Cardamine hirsuta HOM05D005175 ORTHO05D006302 4.3e-11 70.1 33 93.9
Thhalv10002689m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 4.3e-11 70.1 33 93.9
AL2G32490 Arabidopsis lyrata HOM05D005175 ORTHO05D021408 7.3e-11 69.3 33 87.9
Thhalv10002814m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 9.6e-11 68.9 33 90.9
CAN.G1674.2 Capsicum annuum HOM05D005175 ORTHO05D006302 1.2e-10 68.6 33 90.9
Cc08_g09460 Coffea canephora HOM05D005175 ORTHO05D006302 1.2e-10 68.6 33 90.9
Nitab4.5_0007810g0010 Nicotiana tabacum HOM05D005175 ORTHO05D006302 1.2e-10 68.6 33 90.9
Nitab4.5_0007838g0040 Nicotiana tabacum HOM05D005175 ORTHO05D006302 1.2e-10 68.6 33 90.9
Atru.chr7.2095 Acer truncatum HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Atru.chr7.2109 Acer truncatum HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
C03p70530 Brassica napus HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 87.9
BolC3t19335H Brassica oleracea HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 87.9
Duzib150G1530 Durio zibethinus HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
FAN15G2140 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
FAN20G1449 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
FAN27G1436 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Gohir.A13G186200 Gossypium hirsutum HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Gohir.D13G193000 Gossypium hirsutum HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Gorai.013G218900 Gossypium raimondii HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
MD01G1039900 Malus domestica HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Manes.01G107300 Manihot esculenta HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Potri.018G043600 Populus trichocarpa HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
RcHm_v2.0_Chr6g0306141 Rosa chinensis HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
Sabra18G0043700 Salix brachista HOM05D005175 ORTHO05D006302 2.1e-10 67.8 33 90.9
MD15G1311800 Malus domestica HOM05D005175 ORTHO05D006302 2.8e-10 67.4 33 87.9
THA.LOC104814772 Tarenaya hassleriana HOM05D005175 ORTHO05D006302 2.8e-10 67.4 33 87.9
GSVIVG01035631001 Vitis vinifera HOM05D005175 ORTHO05D006302 2.8e-10 67.4 33 87.9
AL1G56380 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 3.6e-10 67.0 33 87.9
BcaC01g01925 Brassica carinata HOM05D005175 ORTHO05D006302 3.6e-10 67.0 33 87.9
A06p20990 Brassica napus HOM05D005175 ORTHO05D006302 3.6e-10 67.0 33 87.9
BraA06t25187Z Brassica rapa HOM05D005175 ORTHO05D006302 3.6e-10 67.0 33 87.9
Sp5g15420 Schrenkiella parvula HOM05D005175 ORTHO05D006302 3.6e-10 67.0 33 87.9
DCAR_004475 Daucus carota HOM05D005175 ORTHO05D006302 4.7e-10 66.6 33 87.9
FvH4_2g35660 Fragaria vesca HOM05D005175 ORTHO05D006302 4.7e-10 66.6 33 87.9
Solyc08g066700.3 Solanum lycopersicum HOM05D005175 ORTHO05D006302 4.7e-10 66.6 33 87.9
PGSC0003DMG400004310 Solanum tuberosum HOM05D005175 ORTHO05D006302 4.7e-10 66.6 33 87.9
Cfa013314 Carpinus fangiana HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
COL.COLO4_17864 Corchorus olitorius HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 84.8
Dinv14260 Davidia involucrata HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
Dinv27896 Davidia involucrata HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
Hma1.2p1_0049F.1_g028670 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
Hma1.2p1_0049F.1_g028680 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
Lj8C577G3 Lonicera japonica HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
Lj8C586G3 Lonicera japonica HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
QL12p029089 Quercus lobata HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
Rhsim02G0179100 Rhododendron simsii HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
TWI32G0813 Tripterygium wilfordii HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
vmacro11061 Vaccinium macrocarpon HOM05D005175 ORTHO05D006302 6.2e-10 66.2 33 87.9
CANSAT11G2394 Cannabis sativa HOM05D005175 ORTHO05D006302 8.1e-10 65.9 33 87.9
Prupe.1G449000 Prunus persica HOM05D005175 ORTHO05D006302 8.1e-10 65.9 33 84.8
CiPaw.11G052500 Carya illinoinensis HOM05D005175 ORTHO05D006302 1.1e-09 65.5 33 87.9
ECA248G2598 Erigeron canadensis HOM05D005175 ORTHO05D006302 1.1e-09 65.5 33 84.8
HanXRQChr01g0029811 Helianthus annuus HOM05D005175 ORTHO05D006302 1.1e-09 65.5 33 84.8
Lsat_1_v5_gn_1_47181 Lactuca sativa HOM05D005175 ORTHO05D006302 1.1e-09 65.5 33 81.8
CSS0003070 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 1.4e-09 65.1 33 81.8
CSS0010535 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 1.4e-09 65.1 33 81.8
Hma1.2p1_0774F.1_g216280 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 1.4e-09 65.1 33 84.8
Sopen08g020660 Solanum pennellii HOM05D005175 ORTHO05D006302 1.4e-09 65.1 33 84.8
MSTRG.11700 Avicennia marina HOM05D005175 ORTHO05D006302 1.8e-09 64.7 33 84.8
Hma1.2p1_0774F.1_g216370 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 1.8e-09 64.7 33 84.8
Peaxi162Scf00227g00213 Petunia axillaris HOM05D005175 ORTHO05D006302 1.8e-09 64.7 33 81.8
PGR044G2490 Punica granatum HOM05D005175 ORTHO05D006302 1.8e-09 64.7 32 87.5
Thecc.09G044300 Theobroma cacao HOM05D005175 ORTHO05D006302 1.8e-09 64.7 33 84.8
Ah.15g099330 Amaranthus hybridus HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
AUR62009295 Chenopodium quinoa HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
AUR62043392 Chenopodium quinoa HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
ClCG08G012270 Citrullus lanatus HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
Ciclev10009310m.g Citrus clementina HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
MELO3C011145.2 Cucumis melo HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
CsaV3_2G030910 Cucumis sativus L. HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
Sed0006550 Sechium edule HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
Hund19520 Selenicereus undatus HOM05D005175 ORTHO05D006302 3.1e-09 63.9 33 87.9
Hma1.2p1_0184F.1_g081320 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 4.0e-09 63.5 33 81.8
Sc09g0009230 Simmondsia chinensis HOM05D005175 ORTHO05D006302 4.0e-09 63.5 33 84.8
Migut.A00211 Erythranthe guttata HOM05D005175 ORTHO05D006302 6.9e-09 62.8 33 78.8
EL10Ac2g04031 Beta vulgaris HOM05D005175 ORTHO05D006302 8.9e-09 62.4 33 84.8
Glyma.09G261100 Glycine max HOM05D005175 ORTHO05D006302 8.9e-09 62.4 33 84.8
Medtr7g076910 Medicago truncatula HOM05D005175 ORTHO05D006302 8.9e-09 62.4 33 84.8
Ca_07899_v3 Cicer arietinum L. HOM05D005175 ORTHO05D006302 1.2e-08 62.0 33 84.8
Phvul.008G066200 Phaseolus vulgaris HOM05D005175 ORTHO05D006302 1.2e-08 62.0 33 81.8
TPR.G26940 Trifolium pratense HOM05D005175 ORTHO05D006302 1.2e-08 62.0 33 81.8
Lj1g0020257 Lotus japonicus HOM05D005175 ORTHO05D006302 2.6e-08 60.8 33 81.8
Glyma.18G230900 Glycine max HOM05D005175 ORTHO05D006302 3.4e-08 60.5 33 81.8
Lalb_Chr08g0233831 Lupinus albus HOM05D005175 ORTHO05D006302 3.4e-08 60.5 33 78.8
PSO566G0264 Papaver somniferum HOM05D005175 ORTHO05D006302 3.4e-08 60.5 33 81.8
PSO782G3154 Papaver somniferum HOM05D005175 ORTHO05D006302 3.4e-08 60.5 33 81.8
Eucgr.C02924 Eucalyptus grandis HOM05D005175 ORTHO05D006302 5.8e-08 59.7 33 81.8
MBI04_g27064_MAGBIO Magnolia biondii HOM05D005175 ORTHO05D006302 5.8e-08 59.7 33 81.8
Nn7g37002 Nelumbo nucifera HOM05D005175 ORTHO05D006302 5.8e-08 59.7 33 81.8
TAR626G1708 Trochodendron aralioides HOM05D005175 ORTHO05D006302 5.8e-08 59.7 33 81.8
TAR636G0460 Trochodendron aralioides HOM05D005175 ORTHO05D006302 5.8e-08 59.7 33 81.8
Psat3g109920 Pisum sativum HOM05D005175 ORTHO05D006302 7.6e-08 59.3 33 78.8
Psat3g124840 Pisum sativum HOM05D005175 ORTHO05D006302 7.6e-08 59.3 33 78.8
Lj2g0027256 Lotus japonicus HOM05D005175 ORTHO05D006302 9.9e-08 58.9 33 78.8
Aqoxy7G01494 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 1.3e-07 58.5 33 78.8
FAN09G0664 Fragaria x ananassa HOM05D005175 ORTHO05D006302 1.7e-07 58.2 31 83.9
Psat0s4355g0080 Pisum sativum HOM05D005175 ORTHO05D006302 2.2e-07 57.8 33 75.8
Aqoxy5G03197 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 3.8e-07 57.0 33 75.8
CDE02G3559 Ceratophyllum demersum HOM05D005175 ORTHO05D006302 3.8e-07 57.0 33 78.8
ATR0705G208 Amborella trichopoda HOM05D005175 ORTHO05D006302 4.9e-07 56.6 33 75.8
AUR62041709 Chenopodium quinoa HOM05D005175 ORTHO05D006302 6.4e-07 56.2 31 80.6
Zm00001eb210560 Zea mays HOM05D005175 ORTHO05D006302 6.4e-07 56.2 33 72.7
Duzib168G0626 Durio zibethinus HOM05D005175 ORTHO05D006302 8.4e-07 55.8 33 75.8
FAN28G1291 Fragaria x ananassa HOM05D005175 ORTHO05D006302 8.4e-07 55.8 43 67.4
Os03g0854200 Oryza sativa ssp. japonica HOM05D005175 ORTHO05D006302 1.4e-06 55.1 33 72.7
RcHm_v2.0_Chr6g0305271 Rosa chinensis HOM05D005175 ORTHO05D006302 2.4e-06 54.3 24 91.7
HPP92_018407 Vanilla planifolia HOM05D005175 ORTHO05D006302 2.4e-06 54.3 33 72.7


User provided reference genes

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