Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G19990 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 1.9e-295 1018.5 531 100.0
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 1.9e-122 443.7 522 54.8
AT4G31900 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 2.2e-105 387.1 539 46.8
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 1.0e-99 368.2 496 48.0
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 3.3e-98 363.2 511 46.2
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 4.4e-98 362.8 496 47.2
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 6.3e-97 359.0 496 46.2
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 1.8e-96 357.5 502 46.0
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 5.3e-96 355.9 504 45.6
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 1.6e-95 354.4 496 46.0
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.0e-94 351.7 496 46.0
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 2.2e-94 350.5 521 45.3
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 5.0e-94 349.4 496 46.6
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 1.9e-93 347.4 497 46.1
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 2.5e-93 347.1 496 46.0
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 3.6e-92 343.2 498 46.4
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 9.7e-90 335.1 495 45.5
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 5.3e-88 329.3 517 43.1
Carub.0007s0864 Capsella rubella HOM05D000104 ORTHO05D003467 1.6e-84 317.8 503 44.9
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.8e-80 304.3 521 41.7
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 6.1e-68 262.7 544 36.8
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 8.9e-67 258.8 544 35.3
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 8.3e-65 252.3 545 34.7
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 4.6e-63 246.5 535 35.5
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.6e-63 246.5 550 33.8
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 5.9e-63 246.1 529 35.2
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 7.8e-63 245.7 548 33.9
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.3e-62 245.0 539 34.7
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 1.7e-62 244.6 511 36.6
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 3.0e-62 243.8 544 33.8
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 6.6e-62 242.7 525 35.2
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 6.6e-62 242.7 549 33.7
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 1.9e-61 241.1 513 35.3
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 2.5e-61 240.7 543 34.6
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 3.3e-61 240.4 517 35.8
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 3.3e-61 240.4 534 35.4
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 4.3e-61 240.0 539 34.5
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 5.6e-61 239.6 562 34.7
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 7.3e-61 239.2 505 41.0
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 9.5e-61 238.8 536 35.6
Hma1.2p1_0392F.1_g143010 Hydrangea macrophylla HOM05D000104 ORTHO05D003467 9.5e-61 238.8 537 34.8
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 9.5e-61 238.8 539 33.8
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 2.8e-60 237.3 517 35.6
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 2.8e-60 237.3 564 32.3
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 4.7e-60 236.5 494 35.4
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 4.7e-60 236.5 543 34.6
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 4.7e-60 236.5 548 34.3
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 8.0e-60 235.7 522 35.1
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 1.0e-59 235.3 534 33.7
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 1.8e-59 234.6 510 34.9
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 2.3e-59 234.2 536 34.1
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 3.1e-59 233.8 528 32.8
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 5.2e-59 233.0 515 34.2
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 5.2e-59 233.0 498 35.9
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 5.2e-59 233.0 531 33.9
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 5.2e-59 233.0 531 34.1
Rhsim07G0163100 Rhododendron simsii HOM05D000104 ORTHO05D003467 5.2e-59 233.0 502 34.3
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 8.9e-59 232.3 540 33.9
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 3.4e-58 230.3 531 36.0
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 7.5e-58 229.2 528 34.1
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 7.5e-58 229.2 520 36.0
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 9.8e-58 228.8 519 35.6
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 9.8e-58 228.8 521 34.2
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 1.3e-57 228.4 483 35.2
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 2.2e-57 227.6 530 35.1
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 2.2e-57 227.6 521 34.9
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 2.9e-57 227.3 529 34.2
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 3.7e-57 226.9 523 33.5
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 6.4e-57 226.1 571 32.6
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 1.4e-56 224.9 513 34.1
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 7.0e-56 222.6 522 33.3
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 9.2e-56 222.2 529 31.9
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 1.2e-55 221.9 495 34.1
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 2.0e-55 221.1 500 33.6
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 2.0e-55 221.1 532 32.7
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 2.0e-55 221.1 522 33.9
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 3.5e-55 220.3 524 33.6
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 6.0e-55 219.5 495 34.5
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 1.0e-54 218.8 521 34.2
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 1.3e-54 218.4 515 32.0
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 1.7e-54 218.0 541 32.3
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 1.7e-54 218.0 527 34.0
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 2.3e-54 217.6 561 32.6
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 5.0e-54 216.5 534 33.9
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 5.0e-54 216.5 521 33.2
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 6.6e-54 216.1 521 34.0
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 8.6e-54 215.7 517 33.8
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 8.6e-54 215.7 536 33.8
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 1.9e-53 214.5 544 32.7
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 2.5e-53 214.2 512 33.8
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 2.5e-53 214.2 530 33.6
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 3.3e-53 213.8 563 33.0
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 5.6e-53 213.0 346 41.0
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 7.3e-53 212.6 574 30.8
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 7.3e-53 212.6 518 32.8
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 2.1e-52 211.1 480 34.0
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 2.1e-52 211.1 530 32.8
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 3.6e-52 210.3 528 32.0
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 1.1e-51 208.8 552 32.4
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 3.1e-51 207.2 361 38.2
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 4.0e-51 206.8 513 33.5
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 8.9e-51 205.7 499 34.7
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 8.9e-51 205.7 334 40.4
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 1.2e-50 205.3 538 32.3
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 5.8e-50 203.0 530 33.0
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 9.9e-50 202.2 524 32.3
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 1.7e-49 201.4 423 39.0
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 2.9e-49 200.7 532 31.0
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 3.7e-49 200.3 434 38.9
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 4.9e-49 199.9 413 38.5
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 8.3e-49 199.1 308 41.9
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 1.4e-48 198.4 432 38.4
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 1.4e-48 198.4 551 30.3
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.4e-48 198.4 602 28.4
Atru.chr7.2524 Acer truncatum HOM05D000104 ORTHO05D003467 3.2e-48 197.2 366 37.4
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 4.1e-48 196.8 519 32.4
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 2.7e-47 194.1 552 33.9
Nitab4.5_0002973g0030 Nicotiana tabacum HOM05D000104 ORTHO05D003467 3.5e-47 193.7 363 38.0
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 4.6e-47 193.4 552 33.9
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 7.8e-47 192.6 578 30.1
SMO228G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 5.1e-46 189.9 492 30.9
SMO200G0085 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 1.1e-45 188.7 414 34.8
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 1.5e-45 188.3 441 37.6
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 7.3e-45 186.0 492 31.7
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 8.1e-44 182.6 439 33.5
THA.LOC104804837 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 2.3e-43 181.0 336 36.0
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.5e-42 178.3 289 41.9
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 2.6e-42 177.6 528 30.5
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 9.9e-42 175.6 381 34.9
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 1.3e-41 175.3 504 31.2
Oeu000758.1 Olea europaea HOM05D000104 ORTHO05D003467 1.7e-41 174.9 246 47.2
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 1.7e-41 174.9 531 29.4
C01p07000 Brassica napus HOM05D000104 ORTHO05D003467 3.8e-41 173.7 381 33.6
Actinidia22307 Actinidia chinensis HOM05D000104 ORTHO05D003467 1.4e-40 171.8 292 40.8
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 1.9e-40 171.4 476 29.6
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 4.1e-40 170.2 277 41.9
BcaC09g51981 Brassica carinata HOM05D000104 ORTHO05D003467 1.2e-39 168.7 414 31.9
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 1.6e-39 168.3 389 34.2
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 1.6e-39 168.3 491 29.3
C07p58980 Brassica napus HOM05D000104 ORTHO05D003467 6.0e-39 166.4 335 35.5
BolC1t00695H Brassica oleracea HOM05D000104 ORTHO05D003467 3.0e-38 164.1 395 32.4
A03p61110 Brassica napus HOM05D000104 ORTHO05D003467 3.9e-38 163.7 334 34.7
Pp3c21_10800 Physcomitrium patens HOM05D000104 ORTHO05D003467 3.9e-38 163.7 434 32.5
vmacro11232 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 4.3e-37 160.2 281 40.2
Pp3c18_19040 Physcomitrium patens HOM05D000104 ORTHO05D003467 1.2e-36 158.7 428 30.6
Pp3c18_19045 Physcomitrium patens HOM05D000104 ORTHO05D003467 1.2e-36 158.7 428 30.6
TPR.G38889 Trifolium pratense HOM05D000104 ORTHO05D003467 1.2e-36 158.7 348 34.2
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 6.2e-36 156.4 437 29.1
THA.LOC104804839 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 2.1e-31 141.4 296 33.4
TWI32G1204 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 3.5e-31 140.6 177 42.9
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 7.8e-31 139.4 317 32.5
Os06g0183800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 5.3e-27 126.7 316 30.7
TPR.G26726 Trifolium pratense HOM05D000104 ORTHO05D003467 1.5e-26 125.2 244 34.0
BolC7t46345H Brassica oleracea HOM05D000104 ORTHO05D003467 1.7e-25 121.7 272 32.7
BraA03t15150Z Brassica rapa HOM05D000104 ORTHO05D003467 3.2e-24 117.5 334 30.5
COL.COLO4_18937 Corchorus olitorius HOM05D000104 ORTHO05D003467 3.2e-24 117.5 219 38.4
HPP92_004615 Vanilla planifolia HOM05D000104 ORTHO05D003467 2.7e-23 114.4 356 26.4
vmacro05139 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.8e-22 111.7 250 32.4
COL.COLO4_18936 Corchorus olitorius HOM05D000104 ORTHO05D003467 1.1e-16 92.4 301 29.2
CBR_g16815 Chara braunii HOM05D000104 ORTHO05D003467 2.1e-15 88.2 174 32.8
CSS0037562 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 2.7e-15 87.8 179 40.8
CSS0021251 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 3.0e-14 84.3 176 38.1
CSS0029706 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 5.6e-13 80.1 199 35.7
TPR.G25705 Trifolium pratense HOM05D002753 ORTHO05D003467 5.6e-13 80.1 122 37.7
HPP92_004609 Vanilla planifolia HOM05D000104 ORTHO05D003467 1.1e-11 75.9 297 26.3
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 3.2e-08 64.3 467 22.9
Haze_26150 Corylus avellana HOM05D000104 ORTHO05D003467 2.1e-07 61.6 285 24.6


User provided reference genes

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