Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G48610 Arabidopsis lyrata HOM05D005175 ORTHO05D038629 1.3e-70 269.6 133 100.0
AT2G07110 Arabidopsis thaliana HOM05D005175 ORTHO05D038629 6.7e-56 220.7 146 80.8
Ah.15g099330 Amaranthus hybridus HOM05D005175 ORTHO05D006302 2.0e-15 86.3 97 53.6
FAN15G2140 Fragaria x ananassa HOM05D005175 ORTHO05D006302 9.8e-15 84.0 99 52.5
MD15G1311800 Malus domestica HOM05D005175 ORTHO05D006302 1.3e-14 83.6 98 52.0
QL12p029089 Quercus lobata HOM05D005175 ORTHO05D006302 1.3e-14 83.6 101 48.5
CARHR154650 Cardamine hirsuta HOM05D005175 ORTHO05D006302 1.7e-14 83.2 84 57.1
FvH4_2g35660 Fragaria vesca HOM05D005175 ORTHO05D006302 1.7e-14 83.2 97 52.6
Lj8C577G3 Lonicera japonica HOM05D005175 ORTHO05D006302 1.7e-14 83.2 105 48.6
Lj8C586G3 Lonicera japonica HOM05D005175 ORTHO05D006302 1.7e-14 83.2 105 48.6
RcHm_v2.0_Chr6g0306141 Rosa chinensis HOM05D005175 ORTHO05D006302 1.7e-14 83.2 97 52.6
Thhalv10002814m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 2.2e-14 82.8 84 57.1
CiPaw.11G052500 Carya illinoinensis HOM05D005175 ORTHO05D006302 2.8e-14 82.4 99 48.5
Prupe.1G449000 Prunus persica HOM05D005175 ORTHO05D006302 3.7e-14 82.0 97 51.5
AT3G46210 Arabidopsis thaliana HOM05D005175 ORTHO05D006302 4.9e-14 81.6 83 56.6
Ciclev10009310m.g Citrus clementina HOM05D005175 ORTHO05D006302 4.9e-14 81.6 99 50.5
Thhalv10002689m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 4.9e-14 81.6 84 56.0
THA.LOC104814772 Tarenaya hassleriana HOM05D005175 ORTHO05D006302 4.9e-14 81.6 99 49.5
EL10Ac2g04031 Beta vulgaris HOM05D005175 ORTHO05D006302 6.3e-14 81.3 100 48.0
Carub.0005s1205 Capsella rubella HOM05D005175 ORTHO05D006302 8.3e-14 80.9 83 56.6
Glyma.18G230900 Glycine max HOM05D005175 ORTHO05D006302 8.3e-14 80.9 99 48.5
Atru.chr7.2109 Acer truncatum HOM05D005175 ORTHO05D006302 1.1e-13 80.5 99 48.5
MD01G1039900 Malus domestica HOM05D005175 ORTHO05D006302 1.1e-13 80.5 99 50.5
Atru.chr7.2095 Acer truncatum HOM05D005175 ORTHO05D006302 1.4e-13 80.1 99 47.5
AL5G25000 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 1.4e-13 80.1 83 55.4
MSTRG.11700 Avicennia marina HOM05D005175 ORTHO05D006302 1.4e-13 80.1 94 50.0
Migut.A00211 Erythranthe guttata HOM05D005175 ORTHO05D006302 1.4e-13 80.1 94 50.0
Sp5g15420 Schrenkiella parvula HOM05D005175 ORTHO05D006302 1.4e-13 80.1 84 54.8
Sed0006550 Sechium edule HOM05D005175 ORTHO05D006302 1.8e-13 79.7 97 48.5
Sopen08g020660 Solanum pennellii HOM05D005175 ORTHO05D006302 1.8e-13 79.7 104 46.2
MELO3C011145.2 Cucumis melo HOM05D005175 ORTHO05D006302 2.4e-13 79.3 97 48.5
CsaV3_2G030910 Cucumis sativus L. HOM05D005175 ORTHO05D006302 2.4e-13 79.3 97 48.5
FAN20G1449 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.4e-13 79.3 97 51.5
TWI32G0813 Tripterygium wilfordii HOM05D005175 ORTHO05D006302 2.4e-13 79.3 84 50.0
Cfa013314 Carpinus fangiana HOM05D005175 ORTHO05D006302 3.2e-13 79.0 99 48.5
Glyma.09G261100 Glycine max HOM05D005175 ORTHO05D006302 3.2e-13 79.0 99 46.5
BcaC01g01925 Brassica carinata HOM05D005175 ORTHO05D006302 4.1e-13 78.6 84 53.6
Thecc.09G044300 Theobroma cacao HOM05D005175 ORTHO05D006302 4.1e-13 78.6 84 53.6
Eucgr.C02924 Eucalyptus grandis HOM05D005175 ORTHO05D006302 5.4e-13 78.2 97 46.4
Sc09g0009230 Simmondsia chinensis HOM05D005175 ORTHO05D006302 5.4e-13 78.2 100 46.0
Dinv14260 Davidia involucrata HOM05D005175 ORTHO05D006302 7.0e-13 77.8 99 47.5
ClCG08G012270 Citrullus lanatus HOM05D005175 ORTHO05D006302 9.2e-13 77.4 97 47.4
CANSAT11G2394 Cannabis sativa HOM05D005175 ORTHO05D006302 1.2e-12 77.0 97 49.5
Haze_21802 Corylus avellana HOM05D005175 ORTHO05D006302 1.2e-12 77.0 111 44.1
Gohir.A13G186200 Gossypium hirsutum HOM05D005175 ORTHO05D006302 1.2e-12 77.0 99 46.5
Potri.018G043600 Populus trichocarpa HOM05D005175 ORTHO05D006302 1.2e-12 77.0 91 47.3
ATR0705G208 Amborella trichopoda HOM05D005175 ORTHO05D006302 1.6e-12 76.6 92 51.1
CSS0010535 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 1.6e-12 76.6 97 47.4
Gohir.D13G193000 Gossypium hirsutum HOM05D005175 ORTHO05D006302 1.6e-12 76.6 99 45.5
Gorai.013G218900 Gossypium raimondii HOM05D005175 ORTHO05D006302 1.6e-12 76.6 99 45.5
Rhsim02G0179100 Rhododendron simsii HOM05D005175 ORTHO05D006302 1.6e-12 76.6 97 47.4
CSS0003070 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 2.0e-12 76.3 97 46.4
Manes.01G107300 Manihot esculenta HOM05D005175 ORTHO05D006302 2.0e-12 76.3 99 48.5
CAN.G1674.2 Capsicum annuum HOM05D005175 ORTHO05D006302 2.7e-12 75.9 97 48.5
Ca_07899_v3 Cicer arietinum L. HOM05D005175 ORTHO05D006302 2.7e-12 75.9 99 43.4
Lj2g0027256 Lotus japonicus HOM05D005175 ORTHO05D006302 2.7e-12 75.9 99 44.4
Nn7g37002 Nelumbo nucifera HOM05D005175 ORTHO05D006302 2.7e-12 75.9 99 47.5
Psat3g109920 Pisum sativum HOM05D005175 ORTHO05D006302 2.7e-12 75.9 98 42.9
Psat3g124840 Pisum sativum HOM05D005175 ORTHO05D006302 2.7e-12 75.9 98 42.9
PGR044G2490 Punica granatum HOM05D005175 ORTHO05D006302 2.7e-12 75.9 83 54.2
Sabra18G0043700 Salix brachista HOM05D005175 ORTHO05D006302 2.7e-12 75.9 91 47.3
GSVIVG01035631001 Vitis vinifera HOM05D005175 ORTHO05D006302 2.7e-12 75.9 99 46.5
Hma1.2p1_0049F.1_g028670 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 3.5e-12 75.5 99 48.5
Hma1.2p1_0049F.1_g028680 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 3.5e-12 75.5 99 48.5
Phvul.008G066200 Phaseolus vulgaris HOM05D005175 ORTHO05D006302 3.5e-12 75.5 99 44.4
Medtr7g076910 Medicago truncatula HOM05D005175 ORTHO05D006302 4.5e-12 75.1 99 44.4
Solyc08g066700.3 Solanum lycopersicum HOM05D005175 ORTHO05D006302 4.5e-12 75.1 97 46.4
Duzib150G1530 Durio zibethinus HOM05D005175 ORTHO05D006302 5.9e-12 74.7 99 47.5
Lj1g0020257 Lotus japonicus HOM05D005175 ORTHO05D006302 7.8e-12 74.3 84 47.6
PGSC0003DMG400004310 Solanum tuberosum HOM05D005175 ORTHO05D006302 7.8e-12 74.3 97 46.4
Lalb_Chr08g0233831 Lupinus albus HOM05D005175 ORTHO05D006302 1.0e-11 73.9 84 48.8
Duzib168G0626 Durio zibethinus HOM05D005175 ORTHO05D006302 1.7e-11 73.2 99 45.5
ECA248G2598 Erigeron canadensis HOM05D005175 ORTHO05D006302 1.7e-11 73.2 97 46.4
Peaxi162Scf00227g00213 Petunia axillaris HOM05D005175 ORTHO05D006302 2.3e-11 72.8 99 44.4
TPR.G26940 Trifolium pratense HOM05D005175 ORTHO05D006302 2.9e-11 72.4 99 40.4
TAR626G1708 Trochodendron aralioides HOM05D005175 ORTHO05D006302 2.9e-11 72.4 99 45.5
TAR636G0460 Trochodendron aralioides HOM05D005175 ORTHO05D006302 2.9e-11 72.4 99 45.5
BolC3t19335H Brassica oleracea HOM05D005175 ORTHO05D006302 5.0e-11 71.6 92 48.9
Lsat_1_v5_gn_1_47181 Lactuca sativa HOM05D005175 ORTHO05D006302 5.0e-11 71.6 97 44.3
MBI04_g27064_MAGBIO Magnolia biondii HOM05D005175 ORTHO05D006302 5.0e-11 71.6 84 50.0
Aqoxy7G01494 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 6.6e-11 71.2 97 45.4
A06p20990 Brassica napus HOM05D005175 ORTHO05D006302 6.6e-11 71.2 92 48.9
CDE02G3559 Ceratophyllum demersum HOM05D005175 ORTHO05D006302 6.6e-11 71.2 84 50.0
Cc08_g09460 Coffea canephora HOM05D005175 ORTHO05D006302 8.6e-11 70.9 97 46.4
Dinv27896 Davidia involucrata HOM05D005175 ORTHO05D006302 8.6e-11 70.9 95 48.4
HanXRQChr01g0029811 Helianthus annuus HOM05D005175 ORTHO05D006302 8.6e-11 70.9 97 44.3
Zm00001eb210560 Zea mays HOM05D005175 ORTHO05D006302 8.6e-11 70.9 84 50.0
PSO566G0264 Papaver somniferum HOM05D005175 ORTHO05D006302 1.1e-10 70.5 99 45.5
PSO782G3154 Papaver somniferum HOM05D005175 ORTHO05D006302 1.1e-10 70.5 99 45.5
Aqoxy5G03197 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 2.5e-10 69.3 86 50.0
Hma1.2p1_0774F.1_g216280 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 3.3e-10 68.9 92 48.9
Os03g0854200 Oryza sativa ssp. japonica HOM05D005175 ORTHO05D006302 5.6e-10 68.2 84 50.0
Hma1.2p1_0774F.1_g216370 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 7.3e-10 67.8 91 48.4
vmacro11061 Vaccinium macrocarpon HOM05D005175 ORTHO05D006302 7.3e-10 67.8 93 47.3
DCAR_004475 Daucus carota HOM05D005175 ORTHO05D006302 9.5e-10 67.4 91 45.1
Nitab4.5_0007810g0010 Nicotiana tabacum HOM05D005175 ORTHO05D006302 9.5e-10 67.4 91 46.2
Ciclev10010872m.g Citrus clementina HOM05D005175 ORTHO05D006302 2.8e-09 65.9 93 45.2
BraA06t25187Z Brassica rapa HOM05D005175 ORTHO05D006302 3.6e-09 65.5 99 45.5
Nitab4.5_0007838g0040 Nicotiana tabacum HOM05D005175 ORTHO05D006302 3.6e-09 65.5 94 47.9
C03p70530 Brassica napus HOM05D005175 ORTHO05D006302 4.0e-08 62.0 97 44.3
Glyma.17G169500 Glycine max HOM05D005175 ORTHO05D006302 5.2e-08 61.6 40 67.5
Gohir.D06G093150 Gossypium hirsutum HOM05D005175 ORTHO05D006302 6.8e-08 61.2 41 68.3
Gorai.010G107600 Gossypium raimondii HOM05D005175 ORTHO05D006302 8.9e-08 60.8 41 70.7
MBI18_g28913_MAGBIO Magnolia biondii HOM05D005175 ORTHO05D006302 2.0e-07 59.7 80 41.2
HPP92_018407 Vanilla planifolia HOM05D005175 ORTHO05D006302 3.4e-07 58.9 99 40.4
Gohir.1Z049557 Gossypium hirsutum HOM05D005175 ORTHO05D006302 4.9e-06 55.1 40 62.5


User provided reference genes

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