Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 9.7e-65 250.0 125 100.0
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 9.7e-65 250.0 125 100.0
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 6.3e-64 247.3 125 98.4
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 94.4
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 94.4
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 94.4
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 94.4
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 5.0e-61 237.7 125 93.6
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 6.5e-61 237.3 125 93.6
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 1.1e-60 236.5 125 92.8
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.1e-60 236.5 125 92.8
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 1.4e-60 236.1 125 93.6
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.4e-60 236.1 125 92.0
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.4e-60 236.1 125 92.0
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 92.0
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.7e-59 231.9 125 92.0
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 90.4
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 90.4
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 3.9e-58 228.0 123 91.9
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 91.2
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 91.2
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 91.2
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 90.4
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 90.4
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 124 90.3
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 89.6
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 2.6e-57 225.3 123 89.4
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 89.6
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 89.6
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 89.6
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 89.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 123 89.4
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 88.8
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 90.2
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 5.7e-57 224.2 124 89.5
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 90.4
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 7.4e-57 223.8 123 89.4
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 7.4e-57 223.8 125 88.8
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 88.0
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 89.6
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 88.8
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 88.8
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 89.6
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 88.8
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 90.4
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 1.7e-56 222.6 123 88.6
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 2.2e-56 222.2 125 87.2
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 2.2e-56 222.2 123 88.6
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.2e-56 222.2 125 88.8
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 2.2e-56 222.2 125 88.8
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 2.8e-56 221.9 128 88.3
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 88.8
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.0
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 90.5
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 6.3e-56 220.7 127 89.0
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 6.3e-56 220.7 121 90.9
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 8.2e-56 220.3 125 87.2
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 8.2e-56 220.3 125 87.2
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 8.2e-56 220.3 125 87.2
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 1.1e-55 219.9 125 88.0
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 1.1e-55 219.9 125 88.0
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 1.8e-55 219.2 123 88.6
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 87.2
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 87.2
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 2.4e-55 218.8 115 92.2
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 2.4e-55 218.8 126 88.1
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 86.4
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 3.1e-55 218.4 121 88.4
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 4.1e-55 218.0 123 88.6
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 4.1e-55 218.0 123 88.6
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 4.1e-55 218.0 126 87.3
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 4.1e-55 218.0 126 87.3
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 5.3e-55 217.6 125 86.4
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 5.3e-55 217.6 125 85.6
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 7.0e-55 217.2 125 88.0
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 9.1e-55 216.9 123 85.4
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.6e-54 216.1 121 87.6
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 2.0e-54 215.7 118 89.8
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 2.0e-54 215.7 128 85.9
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 2.6e-54 215.3 125 88.0
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 2.6e-54 215.3 128 85.2
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 2.6e-54 215.3 128 85.2
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 3.5e-54 214.9 122 86.1
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 4.5e-54 214.5 123 86.2
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 4.5e-54 214.5 123 86.2
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.0e-53 213.4 125 86.4
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 1.3e-53 213.0 117 88.9
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 1.7e-53 212.6 125 86.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 2.2e-53 212.2 129 82.9
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 1.5e-52 209.5 128 85.2
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 3.2e-52 208.4 116 89.7
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 3.2e-52 208.4 122 84.4
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 3.2e-52 208.4 119 84.0
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 4.2e-52 208.0 116 89.7
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 9.4e-52 206.8 125 84.0
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 2.7e-51 205.3 118 83.9
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 2.7e-51 205.3 116 87.9
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 3.6e-51 204.9 118 83.1
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 3.6e-51 204.9 122 82.8
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 4.7e-51 204.5 122 82.8
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 8.0e-51 203.8 119 82.4
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.7e-45 186.0 125 72.8
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.7e-45 186.0 139 71.2
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 7.2e-44 180.6 115 75.7
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 3.0e-42 175.3 106 82.1
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 4.8e-40 167.9 119 67.2
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 3.5e-38 161.8 93 82.8
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.7e-37 159.5 85 90.6
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 6.8e-34 147.5 91 82.4
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 8.9e-34 147.1 109 61.5
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 3.3e-28 128.6 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 1.5e-25 119.8 70 75.7
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 1.2e-17 93.6 99 50.5
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 1.6e-14 83.2 40 97.5
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 4.3e-12 75.1 77 51.9
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 1.4e-07 60.1 102 39.2
unitig_699.g19203 Utricularia gibba HOM05D005326 ORTHO05D006734 1.4e-07 60.1 99 33.3
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 2.4e-07 59.3 106 34.0
Migut.N00441 Erythranthe guttata HOM05D005326 ORTHO05D006734 4.1e-07 58.5 99 37.4
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 5.4e-07 58.2 99 33.3
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 7.1e-07 57.8 84 39.3
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 9.2e-07 57.4 99 36.4
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 9.2e-07 57.4 99 36.4
CARHR155770 Cardamine hirsuta HOM05D005326 ORTHO05D006734 9.2e-07 57.4 99 35.4
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 9.2e-07 57.4 86 36.0
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 1.2e-06 57.0 74 36.5
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 1.6e-06 56.6 64 45.3
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 2.1e-06 56.2 96 34.4
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 2.1e-06 56.2 117 32.5
Hund21715 Selenicereus undatus HOM05D001413 ORTHO05D001385 2.1e-06 56.2 77 37.7
Actinidia34453 Actinidia chinensis HOM05D005326 ORTHO05D006734 2.7e-06 55.8 99 35.4
SEGI_07457 Sequoiadendron giganteum HOM05D005106 ORTHO05D006224 2.7e-06 55.8 62 43.5
SGA_v2.0_scaffold16G07793 Striga asiatica HOM05D005326 ORTHO05D006734 2.7e-06 55.8 99 30.3
SGA_v2.0_scaffold89G27368 Striga asiatica HOM05D005326 ORTHO05D006734 2.7e-06 55.8 99 30.3
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.5e-06 55.5 73 39.7
Cre10.g437850 Chlamydomonas reinhardtii HOM05D005106 ORTHO05D006224 3.5e-06 55.5 72 41.7
Haze_04929 Corylus avellana HOM05D001413 ORTHO05D001385 3.5e-06 55.5 78 39.7
Haze_04930 Corylus avellana HOM05D001413 ORTHO05D001385 3.5e-06 55.5 78 39.7
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 4.6e-06 55.1 83 36.1
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
HanXRQChr10g0299291 Helianthus annuus HOM05D001413 ORTHO05D001385 4.6e-06 55.1 90 34.4
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
TAR636G3268 Trochodendron aralioides HOM05D001413 ORTHO05D001385 4.6e-06 55.1 72 40.3
FAN21G1851 Fragaria x ananassa HOM05D005326 ORTHO05D006734 6.0e-06 54.7 99 33.3
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 6.0e-06 54.7 76 35.5
QL02p056192 Quercus lobata HOM05D000428 ORTHO05D000582 6.0e-06 54.7 71 40.8
Rhsim07G0190000 Rhododendron simsii HOM05D001413 ORTHO05D001385 6.0e-06 54.7 89 36.0
C02p39020 Brassica napus HOM05D001413 ORTHO05D001385 7.8e-06 54.3 77 37.7
CANSAT54G2601 Cannabis sativa HOM05D005326 ORTHO05D006734 7.8e-06 54.3 72 38.9
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 7.8e-06 54.3 83 36.1
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 7.8e-06 54.3 83 37.3
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 7.8e-06 54.3 75 34.7
ECA238G0369 Erigeron canadensis HOM05D005106 ORTHO05D006224 7.8e-06 54.3 67 37.3
FvH4_3g38440 Fragaria vesca HOM05D005326 ORTHO05D006734 7.8e-06 54.3 99 32.3
FAN11G3572 Fragaria x ananassa HOM05D005326 ORTHO05D006734 7.8e-06 54.3 99 32.3
FAN16G2933 Fragaria x ananassa HOM05D005326 ORTHO05D006734 7.8e-06 54.3 99 32.3
FAN25G3125 Fragaria x ananassa HOM05D005326 ORTHO05D006734 7.8e-06 54.3 99 32.3
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.8e-06 54.3 121 34.7
Manes.09G171000 Manihot esculenta HOM05D001413 ORTHO05D001385 7.8e-06 54.3 64 42.2
Manes.13G142600 Manihot esculenta HOM05D005106 ORTHO05D006224 7.8e-06 54.3 67 37.3
Mapoly0007s0152 Marchantia polymorpha HOM05D003264 ORTHO05D003276 7.8e-06 54.3 116 28.4
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 7.8e-06 54.3 73 37.0
Nitab4.5_0002576g0030 Nicotiana tabacum HOM05D003264 ORTHO05D003276 7.8e-06 54.3 106 29.2
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 7.8e-06 54.3 31 77.4
SMO276G0012 Selaginella moellendorffii HOM05D003264 ORTHO05D003276 7.8e-06 54.3 92 29.3
Sc05g0003900 Simmondsia chinensis HOM05D001413 ORTHO05D001385 7.8e-06 54.3 65 41.5
Sc09g0002930 Simmondsia chinensis HOM05D001413 ORTHO05D001385 7.8e-06 54.3 119 30.3
TAR625G1537 Trochodendron aralioides HOM05D003264 ORTHO05D003276 7.8e-06 54.3 128 28.1
HPP92_007900 Vanilla planifolia HOM05D005106 ORTHO05D006224 7.8e-06 54.3 62 43.5


User provided reference genes

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