Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G33310 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 3.5e-73 278.1 133 100.0
AT3G20475 Arabidopsis thaliana HOM05D004988 ORTHO05D005845 5.5e-34 147.9 81 91.4
AL3G34200 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 2.1e-33 146.0 81 90.1
CARHR096230 Cardamine hirsuta HOM05D004988 ORTHO05D005845 2.7e-33 145.6 81 90.1
Sp3g18490 Schrenkiella parvula HOM05D004988 ORTHO05D005845 1.8e-32 142.9 81 87.7
Carub.0003s2042 Capsella rubella HOM05D004988 ORTHO05D005845 4.0e-32 141.7 81 87.7
Thhalv10022259m.g Eutrema salsugineum HOM05D004988 ORTHO05D005845 4.0e-32 141.7 81 85.2
Aa31LG8G7300 Aethionema arabicum HOM05D004988 ORTHO05D005845 6.8e-32 141.0 81 87.7
A05p28340 Brassica napus HOM05D000284 ORTHO05D005845 8.8e-32 140.6 81 85.2
BraA05t21720Z Brassica rapa HOM05D004988 ORTHO05D005845 8.8e-32 140.6 81 85.2
BolC5t33100H Brassica oleracea HOM05D004988 ORTHO05D005845 9.7e-31 137.1 81 82.7
THA.LOC104817863 Tarenaya hassleriana HOM05D004988 ORTHO05D005845 6.3e-30 134.4 81 82.7
BcaNung06350 Brassica carinata HOM05D004988 ORTHO05D005845 1.4e-29 133.3 81 80.2
C05p43830 Brassica napus HOM05D000284 ORTHO05D005845 1.4e-29 133.3 81 80.2
Haze_09701 Corylus avellana HOM05D004988 ORTHO05D005845 7.7e-28 127.5 85 76.5
Cfa020320 Carpinus fangiana HOM05D004988 ORTHO05D005845 2.9e-27 125.6 85 75.3
Manes.03G131500 Manihot esculenta HOM05D004988 ORTHO05D005845 8.5e-27 124.0 122 58.2
Atru.chr1.2791 Acer truncatum HOM05D004988 ORTHO05D005845 1.1e-26 123.6 85 74.1
Prupe.4G216500 Prunus persica HOM05D004988 ORTHO05D005845 1.1e-26 123.6 81 75.3
FAN21G3129 Fragaria x ananassa HOM05D004988 ORTHO05D005845 1.5e-26 123.2 81 76.5
Ciclev10010304m.g Citrus clementina HOM05D004988 ORTHO05D005845 2.5e-26 122.5 81 76.5
RcHm_v2.0_Chr5g0040391 Rosa chinensis HOM05D004988 ORTHO05D005845 1.2e-25 120.2 81 75.3
GSVIVG01037674001 Vitis vinifera HOM05D004988 ORTHO05D005845 1.2e-25 120.2 81 74.1
TAR626G1959 Trochodendron aralioides HOM05D004988 ORTHO05D005845 1.6e-25 119.8 81 75.3
FAN25G1441 Fragaria x ananassa HOM05D004988 ORTHO05D005845 2.1e-25 119.4 81 75.3
FvH4_3g23000 Fragaria vesca HOM05D004988 ORTHO05D005845 2.7e-25 119.0 81 74.1
FAN11G0321 Fragaria x ananassa HOM05D004988 ORTHO05D005845 2.7e-25 119.0 81 74.1
CANSAT11G0463 Cannabis sativa HOM05D004988 ORTHO05D005845 6.1e-25 117.9 84 69.0
FAN16G3602 Fragaria x ananassa HOM05D004988 ORTHO05D005845 8.0e-25 117.5 81 74.1
Sed0003845 Sechium edule HOM05D004988 ORTHO05D005845 8.0e-25 117.5 81 71.6
CsaV3_3G004590 Cucumis sativus L. HOM05D004988 ORTHO05D005845 1.0e-24 117.1 79 73.4
Nn1g03486 Nelumbo nucifera HOM05D004988 ORTHO05D005845 1.0e-24 117.1 81 70.4
Aqoxy1G03129 Aquilegia oxysepala HOM05D004988 ORTHO05D005845 1.8e-24 116.3 81 71.6
MBI18_g26501_MAGBIO Magnolia biondii HOM05D004988 ORTHO05D005845 1.8e-24 116.3 80 71.2
MD11G1214700 Malus domestica HOM05D004988 ORTHO05D005845 3.0e-24 115.5 81 70.4
PGR083G2184 Punica granatum HOM05D004988 ORTHO05D005845 3.0e-24 115.5 105 61.0
ClCG10G004940 Citrullus lanatus HOM05D004988 ORTHO05D005845 4.0e-24 115.2 81 72.8
Dinv40770 Davidia involucrata HOM05D004988 ORTHO05D005845 5.2e-24 114.8 80 70.0
QL08p009463 Quercus lobata HOM05D004988 ORTHO05D005845 1.2e-23 113.6 81 69.1
Actinidia35358 Actinidia chinensis HOM05D004988 ORTHO05D005845 1.5e-23 113.2 81 71.6
CSS0026270 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 1.5e-23 113.2 81 70.4
CSS0035479 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 1.5e-23 113.2 81 70.4
RhsimUnG0249000 Rhododendron simsii HOM05D004988 ORTHO05D005845 1.5e-23 113.2 81 69.1
TPR.G1199 Trifolium pratense HOM05D004988 ORTHO05D005845 1.5e-23 113.2 81 69.1
Duzib213G0327 Durio zibethinus HOM05D004988 ORTHO05D005845 2.0e-23 112.8 80 70.0
arahy.Tifrunner.gnm1.ann1.E8M5A0 Arachis hypogaea HOM05D004988 ORTHO05D005845 2.6e-23 112.5 80 68.8
arahy.Tifrunner.gnm1.ann1.ZUJ4QN Arachis hypogaea HOM05D004988 ORTHO05D005845 2.6e-23 112.5 80 68.8
HanXRQChr03g0079751 Helianthus annuus HOM05D004988 ORTHO05D005845 2.6e-23 112.5 85 68.2
Nitab4.5_0007776g0010 Nicotiana tabacum HOM05D004988 ORTHO05D005845 2.6e-23 112.5 80 68.8
Nitab4.5_0000882g0070 Nicotiana tabacum HOM05D004988 ORTHO05D005845 3.4e-23 112.1 80 68.8
CSS0047944 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 4.4e-23 111.7 81 70.4
Lalb_Chr04g0248341 Lupinus albus HOM05D004988 ORTHO05D005845 4.4e-23 111.7 81 69.1
Potri.011G089500 Populus trichocarpa HOM05D004988 ORTHO05D005845 4.4e-23 111.7 81 69.1
Peaxi162Scf00350g00216 Petunia axillaris HOM05D004988 ORTHO05D005845 5.7e-23 111.3 80 67.5
Sabra11G0079200 Salix brachista HOM05D004988 ORTHO05D005845 5.7e-23 111.3 81 71.6
Migut.M01745 Erythranthe guttata HOM05D004988 ORTHO05D005845 7.5e-23 110.9 81 69.1
Hma1.2p1_0036F.1_g023490 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 7.5e-23 110.9 80 68.8
Hma1.2p1_0036F.1_g023500 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 7.5e-23 110.9 80 68.8
TPR.G29016 Trifolium pratense HOM05D004988 ORTHO05D005845 7.5e-23 110.9 89 64.0
PSO541G0855 Papaver somniferum HOM05D004988 ORTHO05D005845 9.8e-23 110.5 93 60.2
HanXRQChr03g0079771 Helianthus annuus HOM05D004988 ORTHO05D005845 1.3e-22 110.2 85 65.9
Psat2g012000 Pisum sativum HOM05D004988 ORTHO05D005845 1.3e-22 110.2 81 67.9
Sc16g0005920 Simmondsia chinensis HOM05D004988 ORTHO05D005845 1.3e-22 110.2 81 69.1
TWI38G0959 Tripterygium wilfordii HOM05D004988 ORTHO05D005845 1.3e-22 110.2 81 70.4
FAN25G2375 Fragaria x ananassa HOM05D004988 ORTHO05D005845 1.7e-22 109.8 81 72.8
HanXRQChr03g0079801 Helianthus annuus HOM05D004988 ORTHO05D005845 1.7e-22 109.8 85 67.1
Medtr5g093110 Medicago truncatula HOM05D004988 ORTHO05D005845 1.7e-22 109.8 80 67.5
MSTRG.6932 Avicennia marina HOM05D004988 ORTHO05D005845 2.8e-22 109.0 77 68.8
HanXRQChr05g0152621 Helianthus annuus HOM05D004988 ORTHO05D005845 2.8e-22 109.0 85 67.1
Sopen10g008290 Solanum pennellii HOM05D004988 ORTHO05D005845 2.8e-22 109.0 80 67.5
Eucgr.F00744 Eucalyptus grandis HOM05D004988 ORTHO05D005845 3.7e-22 108.6 81 67.9
CAN.G1568.1 Capsicum annuum HOM05D004988 ORTHO05D005845 4.8e-22 108.2 80 66.2
LjContig00272g0019234 Lotus japonicus HOM05D004988 ORTHO05D005845 4.8e-22 108.2 81 65.4
Solyc10g018530.2 Solanum lycopersicum HOM05D004988 ORTHO05D005845 4.8e-22 108.2 80 66.2
Thecc.07G033400 Theobroma cacao HOM05D004988 ORTHO05D005845 8.3e-22 107.5 81 66.7
Lsat_1_v5_gn_9_90520 Lactuca sativa HOM05D004988 ORTHO05D005845 1.1e-21 107.1 85 64.7
AUR62015808 Chenopodium quinoa HOM05D004988 ORTHO05D005845 1.4e-21 106.7 122 51.6
Glyma.14G022400 Glycine max HOM05D004988 ORTHO05D005845 3.1e-21 105.5 81 63.0
CiPaw.11G191700 Carya illinoinensis HOM05D004988 ORTHO05D005845 4.1e-21 105.1 72 75.0
EL10Ac4g07775 Beta vulgaris HOM05D004988 ORTHO05D005845 9.1e-21 104.0 81 65.4
Glyma.02G292202 Glycine max HOM05D004988 ORTHO05D005845 9.1e-21 104.0 86 60.5
Cc05_g13960 Coffea canephora HOM05D004988 ORTHO05D005845 1.2e-20 103.6 80 65.0
VMungo0647G1120 Vigna mungo HOM05D004988 ORTHO05D005845 1.2e-20 103.6 81 64.2
Oeu062583.1 Olea europaea HOM05D004988 ORTHO05D005845 1.6e-20 103.2 81 64.2
SGA_v2.0_scaffold36G14386 Striga asiatica HOM05D004988 ORTHO05D005845 2.0e-20 102.8 81 64.2
Phvul.008G268900 Phaseolus vulgaris HOM05D004988 ORTHO05D005845 3.5e-20 102.1 81 63.0
Gohir.A04G013900 Gossypium hirsutum HOM05D004988 ORTHO05D005845 4.5e-20 101.7 80 62.5
HPP92_001598 Vanilla planifolia HOM05D004988 ORTHO05D005845 5.9e-20 101.3 122 48.4
Gohir.D05G372400 Gossypium hirsutum HOM05D004988 ORTHO05D005845 7.7e-20 100.9 80 62.5
Os05g0498300 Oryza sativa ssp. japonica HOM05D004988 ORTHO05D005845 1.7e-19 99.8 69 71.0
ECA240G2090 Erigeron canadensis HOM05D004988 ORTHO05D005845 2.3e-19 99.4 85 61.2
unitig_578.g15992 Utricularia gibba HOM05D004988 ORTHO05D005845 2.3e-19 99.4 81 63.0
Zm00001eb352660 Zea mays HOM05D004988 ORTHO05D005845 2.9e-19 99.0 69 69.6
Zm00001eb352670 Zea mays HOM05D004988 ORTHO05D005845 2.9e-19 99.0 69 69.6
Gorai.009G440600 Gossypium raimondii HOM05D004988 ORTHO05D005845 6.6e-19 97.8 78 62.8
ATR0794G119 Amborella trichopoda HOM05D004988 ORTHO05D005845 4.2e-18 95.1 69 66.7
Hund02015 Selenicereus undatus HOM05D004988 ORTHO05D005845 4.2e-18 95.1 111 50.5
AUR62020409 Chenopodium quinoa HOM05D004988 ORTHO05D005845 7.2e-18 94.4 122 48.4
PGR083G0916 Punica granatum HOM05D004988 ORTHO05D005845 1.8e-16 89.7 109 48.6
HPP92_001600 Vanilla planifolia HOM05D004988 ORTHO05D005845 5.2e-16 88.2 122 44.3
AagrBONN_evm.TU.Sc2ySwM_344.3443 Anthoceros agrestis HOM05D004988 ORTHO05D005845 6.3e-14 81.3 69 56.5
SMO340G0188 Selaginella moellendorffii HOM05D004988 ORTHO05D005845 1.6e-12 76.6 69 56.5
HPP92_001589 Vanilla planifolia HOM05D004988 ORTHO05D005845 1.6e-12 76.6 92 52.2
BcaC05g28338 Brassica carinata HOM05D004988 ORTHO05D018599 1.6e-09 66.6 31 90.3
Pp3c2_9530 Physcomitrium patens HOM05D004988 ORTHO05D005845 1.0e-08 63.9 96 41.7
Mapoly0055s0066 Marchantia polymorpha HOM05D004988 ORTHO05D005845 4.0e-08 62.0 70 45.7
COL.COLO4_09682 Corchorus olitorius HOM05D004988 ORTHO05D005845 4.4e-07 58.5 38 73.7
vmacro09701 Vaccinium macrocarpon HOM05D004988 ORTHO05D005845 6.4e-06 54.7 61 45.9
RcHm_v2.0_Chr5g0040451 Rosa chinensis HOM05D004988 ORTHO05D005845 8.3e-06 54.3 83 37.3


User provided reference genes

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