Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.5e-246 854.4 500 100.0
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 8.2e-232 807.0 500 93.6
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.1e-231 806.6 500 94.4
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.5e-228 796.2 500 89.2
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.4e-226 789.6 500 88.4
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.4e-223 778.9 500 93.8
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 2.4e-223 778.9 500 86.8
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.9e-221 771.9 500 91.2
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.1e-220 770.0 500 89.4
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-220 770.0 500 89.4
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 9.4e-220 766.9 498 89.4
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 9.4e-220 766.9 498 89.4
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.7e-216 756.1 500 89.0
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.8e-216 755.4 500 86.8
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.4e-215 753.1 516 86.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 3.5e-214 748.4 500 86.6
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 3.5e-214 748.4 500 87.4
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 7.7e-214 747.3 500 82.4
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 7.7e-214 747.3 498 83.5
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 1.7e-213 746.1 500 87.0
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.3e-213 745.7 498 82.7
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 3.8e-213 745.0 500 88.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 3.8e-213 745.0 500 87.0
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.8e-213 745.0 500 87.2
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 5.0e-213 744.6 498 86.1
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 8.6e-213 743.8 500 82.6
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 8.6e-213 743.8 500 86.4
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.5e-212 743.0 498 82.1
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.2e-212 741.5 500 86.0
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 7.2e-212 740.7 500 87.0
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 9.5e-212 740.3 500 86.4
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.2e-211 740.0 500 86.8
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.6e-211 739.6 500 87.0
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.8e-211 738.8 498 85.7
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 8.0e-211 737.3 500 84.6
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 8.0e-211 737.3 500 85.4
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.0e-210 736.9 500 81.2
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.4e-210 736.5 500 85.4
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 1.4e-210 736.5 500 85.6
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.8e-210 736.1 500 85.4
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.3e-210 735.7 500 82.0
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 2.3e-210 735.7 500 86.0
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.0e-210 735.3 500 86.2
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 5.2e-210 734.6 500 86.4
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.2e-209 733.4 500 86.0
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.5e-209 733.0 500 81.4
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 2.0e-209 732.6 500 86.4
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 2.6e-209 732.3 500 85.8
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 4.4e-209 731.5 500 85.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 7.5e-209 730.7 500 86.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 9.8e-209 730.3 500 85.0
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 9.8e-209 730.3 500 86.2
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.3e-208 729.9 500 85.2
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.7e-208 729.6 500 85.6
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 2.8e-208 728.8 500 86.4
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 2.8e-208 728.8 500 85.4
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.1e-207 726.9 500 84.8
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.4e-207 726.5 500 81.2
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 2.4e-207 725.7 498 85.3
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.4e-207 725.7 500 85.8
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.2e-206 723.4 500 86.0
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.5e-206 721.8 523 78.0
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 3.5e-206 721.8 500 85.2
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 5.9e-206 721.1 500 85.0
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 2.3e-205 719.2 500 84.0
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 3.8e-205 718.4 500 84.4
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 6.6e-205 717.6 520 73.5
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.9e-204 716.1 500 83.6
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.5e-204 715.7 500 79.8
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 4.3e-204 714.9 500 83.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.2e-203 713.4 500 83.0
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.6e-203 713.0 500 83.4
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.6e-203 713.0 500 82.6
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.8e-203 712.2 500 82.6
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 6.1e-203 711.1 500 82.4
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.0e-202 710.3 500 84.8
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 3.1e-202 708.8 500 84.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 3.1e-202 708.8 499 79.0
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 3.1e-202 708.8 504 82.5
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 4.0e-202 708.4 500 78.8
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.0e-202 708.4 500 78.8
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.0e-201 706.1 500 84.2
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.4e-201 705.3 500 84.0
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 9.8e-201 703.7 500 83.8
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.3e-200 703.4 500 82.8
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.7e-200 703.0 500 82.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 2.4e-199 699.1 500 82.0
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 5.4e-199 698.0 500 82.4
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 9.2e-199 697.2 500 82.8
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.6e-198 694.9 528 74.8
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.7e-195 684.9 500 77.4
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.4e-193 678.3 485 82.5
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.7e-192 675.2 500 78.6
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 9.2e-191 670.6 500 79.6
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 4.6e-190 668.3 521 77.2
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 6.0e-190 667.9 500 71.6
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.3e-189 666.8 543 75.0
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.3e-189 666.8 500 72.6
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.9e-188 662.9 496 81.2
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 8.1e-187 657.5 511 79.1
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 4.0e-186 655.2 500 78.0
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.5e-185 653.3 500 72.2
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.4e-183 646.0 484 79.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.3e-181 640.2 450 87.1
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.1e-178 630.6 538 65.4
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.4e-178 630.2 454 85.0
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 5.8e-177 624.8 435 85.1
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 8.4e-176 620.9 428 86.9
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 8.1e-171 604.4 430 85.6
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.4e-169 598.6 500 76.0
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 3.5e-166 589.0 500 74.0
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 7.6e-153 544.7 414 82.4
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.2e-145 520.8 499 64.9
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 2.9e-128 463.0 255 89.4
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 1.3e-120 437.6 240 89.2
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.3e-115 421.0 322 76.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.6e-110 402.9 298 76.5
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 2.5e-103 380.2 371 58.5
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 2.1e-94 350.5 196 88.8
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 2.1e-94 350.5 196 88.8
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.4e-90 337.8 365 71.8
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.2e-75 287.3 257 73.5
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 6.2e-70 269.2 512 39.1
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 3.4e-68 263.5 176 82.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 3.4e-68 263.5 508 46.9
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 1.8e-53 214.5 119 89.1
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 7.3e-47 192.6 132 70.5
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.5e-41 173.7 99 80.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.5e-39 168.3 318 40.6
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.1e-34 152.1 80 88.8
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.2e-33 148.7 299 33.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-32 145.6 133 65.4
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.3e-31 140.6 107 69.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.7e-27 128.3 66 92.4
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 2.9e-27 127.5 64 95.3
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.9e-27 127.5 64 95.3
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 5.5e-26 123.2 65 92.3
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.3e-24 118.6 66 84.8
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.0e-24 117.5 166 45.2
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.5e-23 114.4 56 91.1
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 4.8e-22 110.2 53 92.5
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.2e-17 95.5 56 71.4
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.2e-17 95.5 47 85.1
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.3e-16 91.3 47 95.7
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 2.3e-16 91.3 47 80.9
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 8.8e-16 89.4 73 58.9
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 8.8e-16 89.4 73 58.9
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.7e-12 76.3 36 86.1
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.7e-11 75.1 134 65.7
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.2e-11 74.7 107 41.1
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 2.5e-10 71.2 36 86.1
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 1.2e-09 68.9 63 61.9
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.4e-08 65.5 35 85.7


User provided reference genes

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