Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G32490 Arabidopsis lyrata HOM05D005175 ORTHO05D021408 2.8e-113 412.1 237 100.0
AL2G32480 Arabidopsis lyrata HOM05D002658 ORTHO05D021408 2.6e-42 176.4 271 53.9
Carub.0002s1964 Capsella rubella HOM05D002658 ORTHO05D021408 9.5e-37 157.9 283 42.0
CARHR065730 Cardamine hirsuta HOM05D002658 ORTHO05D021408 2.1e-31 140.2 250 44.0
AT1G72800 Arabidopsis thaliana HOM05D002658 ORTHO05D021408 5.6e-21 105.5 345 30.7
CARHR065710 Cardamine hirsuta HOM05D002658 ORTHO05D021408 3.1e-19 99.8 183 41.0
AL9U12120 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 3.4e-10 69.7 33 87.9
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 3.4e-10 69.7 57 71.9
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 4.4e-10 69.3 57 73.7
AL5G25000 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 1.3e-09 67.8 32 87.5
AT3G46210 Arabidopsis thaliana HOM05D005175 ORTHO05D006302 1.3e-09 67.8 32 87.5
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 1.3e-09 67.8 52 73.1
Carub.0005s1205 Capsella rubella HOM05D005175 ORTHO05D006302 1.3e-09 67.8 32 87.5
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 1.7e-09 67.4 52 71.2
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 1.7e-09 67.4 52 73.1
PGR044G2490 Punica granatum HOM05D005175 ORTHO05D006302 2.9e-09 66.6 38 73.7
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 3.8e-09 66.2 51 74.5
CARHR154650 Cardamine hirsuta HOM05D005175 ORTHO05D006302 4.9e-09 65.9 32 84.4
Thhalv10002689m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 4.9e-09 65.9 32 84.4
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 6.4e-09 65.5 51 72.5
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 6.4e-09 65.5 51 72.5
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 6.4e-09 65.5 51 72.5
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 8.4e-09 65.1 46 80.4
Thhalv10002814m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 1.1e-08 64.7 32 81.2
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.1e-08 64.7 52 73.1
CAN.G1674.2 Capsicum annuum HOM05D005175 ORTHO05D006302 1.4e-08 64.3 32 81.2
Cc08_g09460 Coffea canephora HOM05D005175 ORTHO05D006302 1.4e-08 64.3 32 81.2
Nitab4.5_0007810g0010 Nicotiana tabacum HOM05D005175 ORTHO05D006302 1.4e-08 64.3 32 81.2
Nitab4.5_0007838g0040 Nicotiana tabacum HOM05D005175 ORTHO05D006302 1.4e-08 64.3 32 81.2
AT4G08760 Arabidopsis thaliana HOM05D002658 ORTHO05D082112 1.9e-08 63.9 70 60.0
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 1.9e-08 63.9 52 73.1
Atru.chr7.2095 Acer truncatum HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
Atru.chr7.2109 Acer truncatum HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
C03p70530 Brassica napus HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 78.1
BolC3t19335H Brassica oleracea HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 78.1
Dinv27896 Davidia involucrata HOM05D005175 ORTHO05D006302 2.4e-08 63.5 40 70.0
Duzib150G1530 Durio zibethinus HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
FAN15G2140 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
FAN20G1449 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
FAN27G1436 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.4e-08 63.5 40 70.0
Gohir.A13G186200 Gossypium hirsutum HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
Gohir.D13G193000 Gossypium hirsutum HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
Gorai.013G218900 Gossypium raimondii HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
MD01G1039900 Malus domestica HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
Manes.01G107300 Manihot esculenta HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
Potri.018G043600 Populus trichocarpa HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
RcHm_v2.0_Chr6g0306141 Rosa chinensis HOM05D005175 ORTHO05D006302 2.4e-08 63.5 40 70.0
Sabra18G0043700 Salix brachista HOM05D005175 ORTHO05D006302 2.4e-08 63.5 32 81.2
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 3.2e-08 63.2 74 56.8
MD15G1311800 Malus domestica HOM05D005175 ORTHO05D006302 3.2e-08 63.2 32 78.1
THA.LOC104814772 Tarenaya hassleriana HOM05D005175 ORTHO05D006302 3.2e-08 63.2 32 78.1
GSVIVG01035631001 Vitis vinifera HOM05D005175 ORTHO05D006302 3.2e-08 63.2 32 78.1
AL1G56380 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 78.1
BcaC01g01925 Brassica carinata HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 78.1
A06p20990 Brassica napus HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 78.1
BraA06t25187Z Brassica rapa HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 78.1
ECA248G2598 Erigeron canadensis HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 81.2
HanXRQChr01g0029811 Helianthus annuus HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 81.2
Lsat_1_v5_gn_1_47181 Lactuca sativa HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 78.1
Sp5g15420 Schrenkiella parvula HOM05D005175 ORTHO05D006302 4.2e-08 62.8 32 78.1
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 5.4e-08 62.4 44 81.8
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 5.4e-08 62.4 44 81.8
CSS0003070 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 5.4e-08 62.4 32 78.1
CSS0010535 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 5.4e-08 62.4 32 78.1
DCAR_004475 Daucus carota HOM05D005175 ORTHO05D006302 5.4e-08 62.4 32 78.1
FvH4_2g35660 Fragaria vesca HOM05D005175 ORTHO05D006302 5.4e-08 62.4 40 67.5
Solyc08g066700.3 Solanum lycopersicum HOM05D005175 ORTHO05D006302 5.4e-08 62.4 32 78.1
PGSC0003DMG400004310 Solanum tuberosum HOM05D005175 ORTHO05D006302 5.4e-08 62.4 32 78.1
Cfa013314 Carpinus fangiana HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
COL.COLO4_17864 Corchorus olitorius HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 75.0
Dinv14260 Davidia involucrata HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
Hma1.2p1_0049F.1_g028670 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
Hma1.2p1_0049F.1_g028680 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
Lj8C577G3 Lonicera japonica HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
Lj8C586G3 Lonicera japonica HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
Peaxi162Scf00227g00213 Petunia axillaris HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 75.0
QL12p029089 Quercus lobata HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
Rhsim02G0179100 Rhododendron simsii HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
TWI32G0813 Tripterygium wilfordii HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
vmacro11061 Vaccinium macrocarpon HOM05D005175 ORTHO05D006302 7.1e-08 62.0 32 78.1
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 9.3e-08 61.6 80 51.2
CANSAT11G2394 Cannabis sativa HOM05D005175 ORTHO05D006302 9.3e-08 61.6 32 78.1
Prupe.1G449000 Prunus persica HOM05D005175 ORTHO05D006302 9.3e-08 61.6 40 65.0
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 1.2e-07 61.2 53 69.8
CiPaw.11G052500 Carya illinoinensis HOM05D005175 ORTHO05D006302 1.2e-07 61.2 32 78.1
BcaC07g37093 Brassica carinata HOM05D002658 ORTHO05D003000 1.6e-07 60.8 52 69.2
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 1.6e-07 60.8 53 69.8
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 1.6e-07 60.8 52 69.2
BolC8t47262H Brassica oleracea HOM05D002658 ORTHO05D003000 1.6e-07 60.8 52 69.2
Hma1.2p1_0774F.1_g216280 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 1.6e-07 60.8 32 75.0
Sopen08g020660 Solanum pennellii HOM05D005175 ORTHO05D006302 1.6e-07 60.8 32 75.0
MSTRG.11700 Avicennia marina HOM05D005175 ORTHO05D006302 2.1e-07 60.5 32 75.0
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 2.1e-07 60.5 52 67.3
Hma1.2p1_0774F.1_g216370 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 2.1e-07 60.5 32 75.0
Thecc.09G044300 Theobroma cacao HOM05D005175 ORTHO05D006302 2.1e-07 60.5 32 75.0
Sc09g0009230 Simmondsia chinensis HOM05D005175 ORTHO05D006302 2.7e-07 60.1 32 81.2
Ah.15g099330 Amaranthus hybridus HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
AUR62009295 Chenopodium quinoa HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
AUR62043392 Chenopodium quinoa HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
ClCG08G012270 Citrullus lanatus HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
Ciclev10009310m.g Citrus clementina HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
MELO3C011145.2 Cucumis melo HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
CsaV3_2G030910 Cucumis sativus L. HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
Sed0006550 Sechium edule HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
Hund19520 Selenicereus undatus HOM05D005175 ORTHO05D006302 3.5e-07 59.7 32 78.1
C02p30260 Brassica napus HOM05D020263 ORTHO05D021596 4.6e-07 59.3 108 43.5
Hma1.2p1_0184F.1_g081320 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 4.6e-07 59.3 32 71.9
Migut.A00211 Erythranthe guttata HOM05D005175 ORTHO05D006302 7.9e-07 58.5 32 68.8
EL10Ac2g04031 Beta vulgaris HOM05D005175 ORTHO05D006302 1.0e-06 58.2 32 75.0
Glyma.09G261100 Glycine max HOM05D005175 ORTHO05D006302 1.0e-06 58.2 32 75.0
Medtr7g076910 Medicago truncatula HOM05D005175 ORTHO05D006302 1.0e-06 58.2 32 75.0
Ca_07899_v3 Cicer arietinum L. HOM05D005175 ORTHO05D006302 1.3e-06 57.8 32 75.0
Lalb_Chr08g0233831 Lupinus albus HOM05D005175 ORTHO05D006302 1.3e-06 57.8 32 75.0
Phvul.008G066200 Phaseolus vulgaris HOM05D005175 ORTHO05D006302 1.3e-06 57.8 32 71.9
TPR.G26940 Trifolium pratense HOM05D005175 ORTHO05D006302 1.3e-06 57.8 32 71.9
Lj1g0020257 Lotus japonicus HOM05D005175 ORTHO05D006302 1.7e-06 57.4 32 75.0
FAN09G0664 Fragaria x ananassa HOM05D005175 ORTHO05D006302 3.9e-06 56.2 31 74.2
Glyma.18G230900 Glycine max HOM05D005175 ORTHO05D006302 3.9e-06 56.2 32 71.9
PSO566G0264 Papaver somniferum HOM05D005175 ORTHO05D006302 3.9e-06 56.2 32 71.9
PSO782G3154 Papaver somniferum HOM05D005175 ORTHO05D006302 3.9e-06 56.2 32 71.9
Psat3g109920 Pisum sativum HOM05D005175 ORTHO05D006302 5.1e-06 55.8 32 71.9
Psat3g124840 Pisum sativum HOM05D005175 ORTHO05D006302 5.1e-06 55.8 32 71.9
Eucgr.C02924 Eucalyptus grandis HOM05D005175 ORTHO05D006302 6.6e-06 55.5 31 74.2
Lj2g0027256 Lotus japonicus HOM05D005175 ORTHO05D006302 6.6e-06 55.5 32 71.9
MBI04_g27064_MAGBIO Magnolia biondii HOM05D005175 ORTHO05D006302 6.6e-06 55.5 32 71.9
Nn7g37002 Nelumbo nucifera HOM05D005175 ORTHO05D006302 6.6e-06 55.5 32 71.9
TAR626G1708 Trochodendron aralioides HOM05D005175 ORTHO05D006302 6.6e-06 55.5 32 71.9
TAR636G0460 Trochodendron aralioides HOM05D005175 ORTHO05D006302 6.6e-06 55.5 32 71.9
Psat0s4355g0080 Pisum sativum HOM05D005175 ORTHO05D006302 8.7e-06 55.1 32 71.9


User provided reference genes

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