Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1885.5 978 100.0
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1853.2 981 98.1
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1781.1 981 94.4
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1743.8 980 92.7
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1738.8 983 91.9
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1736.5 994 91.6
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1733.8 981 92.7
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1724.1 997 91.7
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1724.1 997 91.7
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1723.8 978 90.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1626.3 979 86.2
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1595.1 981 85.7
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1483.4 977 79.0
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1478.4 975 78.4
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 979 77.5
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1458.7 977 76.3
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1458.4 977 76.7
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1458.0 985 76.0
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1457.6 976 77.8
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1456.8 977 76.9
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1454.5 982 77.4
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1454.5 979 76.1
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 977 78.1
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1450.6 929 78.0
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 973 75.7
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 933 77.2
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 983 75.5
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1447.2 981 75.7
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1446.4 981 75.6
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 975 76.7
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 978 75.4
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1442.9 982 76.6
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1442.2 975 77.1
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 975 75.4
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 978 76.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 977 75.7
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1440.6 980 76.2
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1440.2 1003 75.4
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 986 75.6
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1438.7 987 75.6
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1437.2 977 74.9
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 973 74.4
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 975 75.5
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1435.2 977 76.0
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1434.1 976 75.3
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1431.8 978 76.2
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1429.8 931 76.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1429.8 977 76.4
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1429.5 975 75.2
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1428.7 981 75.1
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1427.9 976 74.7
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 981 75.0
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1425.2 977 76.2
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1424.8 975 74.1
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1420.2 977 75.1
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1419.1 975 76.3
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1418.7 977 74.7
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1418.3 982 75.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1417.5 975 73.8
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 978 75.9
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 932 76.8
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1415.2 975 74.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1414.4 978 73.9
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1413.3 977 74.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1411.4 978 74.6
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1411.4 976 75.0
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1409.0 977 74.4
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1404.8 974 75.7
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1402.1 976 74.1
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 982 74.7
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 981 74.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 986 74.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1399.4 995 73.3
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 976 75.5
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1396.3 976 74.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1395.2 977 73.7
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1394.0 973 73.7
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1389.8 941 73.6
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1387.9 978 73.9
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1384.4 977 74.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1379.8 983 73.1
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1378.6 978 72.6
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1378.2 932 73.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1377.1 936 73.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1376.3 1006 69.8
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1372.1 1002 70.7
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1370.9 979 74.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1369.4 983 73.0
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1368.2 985 73.5
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1364.4 937 71.9
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1354.3 975 72.4
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1352.0 964 73.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1339.3 978 72.6
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1339.3 1200 62.2
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1333.2 973 69.9
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1330.9 924 74.5
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1327.4 982 68.0
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1318.1 859 76.3
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1316.6 939 72.2
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1311.6 976 66.6
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1309.7 975 69.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1298.1 937 68.8
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1290.8 941 68.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1285.8 985 70.3
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1280.8 849 74.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1263.1 930 67.6
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1249.6 938 66.8
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1248.4 941 68.2
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1242.3 795 79.1
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1239.6 940 67.7
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1225.3 795 77.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1166.0 943 61.4
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1159.1 736 77.4
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1157.1 796 71.2
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1097.0 962 57.1
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1096.6 969 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 2.7e-311 1072.0 996 56.1
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.3e-305 1053.1 974 59.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 1.2e-303 1046.6 707 74.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 5.6e-301 1037.7 953 55.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 8.1e-292 1007.3 731 73.1
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.4e-281 970.7 670 73.6
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.6e-277 957.2 795 60.0
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.7e-261 904.8 591 76.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.2e-257 892.9 682 69.9
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-229 800.8 578 71.5
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 3.7e-220 769.2 542 72.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 6.4e-212 741.9 617 65.2
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 9.5e-200 701.4 519 68.2
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.2e-195 686.4 443 81.0
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.3e-176 622.1 395 76.7
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-171 607.1 363 79.9
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.0e-169 600.1 1053 37.1
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.2e-143 514.2 416 60.3
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.0e-141 507.7 431 60.6
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.9e-140 503.8 829 36.9
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 5.5e-115 419.9 411 56.7
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.7e-109 401.0 253 76.7
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 4.5e-109 400.2 224 86.2
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 4.7e-106 390.2 1054 27.0
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.3e-103 379.8 867 32.3
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.4e-102 378.6 288 68.1
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 8.6e-92 342.8 262 66.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 8.6e-92 342.8 262 66.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.3e-87 328.9 365 44.4
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.5e-85 320.9 258 64.3
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 7.6e-80 303.1 309 54.4
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 8.7e-52 209.9 146 68.5
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 8.1e-50 203.4 169 52.1
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 6.5e-47 193.7 157 61.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 6.5e-47 193.7 157 61.1
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 3.9e-44 184.5 148 62.2
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.1e-43 183.0 258 45.7
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.8e-42 178.3 1036 21.3
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 1.5e-40 172.6 99 83.8
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.9e-38 165.6 127 63.8
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 7.2e-38 163.7 104 77.9
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.1e-37 162.2 141 61.0
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 2.3e-36 158.7 142 48.6
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.4e-33 148.7 168 47.6
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.4e-33 148.7 76 85.5
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.1e-33 147.9 76 85.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.3e-33 147.5 79 83.5
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.9e-33 147.1 76 84.2
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.0e-31 141.0 80 77.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.5e-31 140.6 84 77.4
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.9e-30 139.0 115 62.6
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 6.1e-29 134.0 88 75.0
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 1.4e-28 132.9 127 55.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.8e-26 125.2 65 89.2
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 7.7e-24 117.1 79 75.9
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 5.0e-23 114.4 138 43.5
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.6e-21 108.2 143 49.0
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.4e-17 96.3 116 44.8
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 5.3e-17 94.4 129 45.0
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.7e-15 89.4 82 54.9
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.2e-14 85.1 135 39.3
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 5.3e-09 67.8 56 60.7
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.0e-07 63.5 46 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 8.5e-07 60.5 42 61.9
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 4.2e-06 58.2 48 54.2


User provided reference genes

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