Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.4e-178 627.9 323 100.0
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.1e-173 613.2 323 97.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 8.4e-169 597.0 325 95.1
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.6e-167 592.8 325 93.5
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.4e-162 575.1 325 90.8
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-161 573.2 324 90.7
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.1e-160 570.1 324 90.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.2e-160 568.5 323 90.4
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 4.2e-160 568.2 324 89.2
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 3.5e-159 565.1 324 89.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.6e-148 529.6 323 82.4
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.6e-146 522.3 325 80.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.5e-146 521.5 335 79.7
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.7e-129 466.5 323 73.7
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.2e-127 460.3 323 73.1
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.1e-127 459.5 323 72.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.9e-126 455.3 323 71.5
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.7e-126 454.5 323 70.9
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-125 453.8 323 72.1
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.8e-124 449.1 323 71.5
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.8e-124 448.4 327 67.9
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 8.2e-124 447.6 324 75.3
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.1e-123 447.2 332 71.1
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 6.9e-123 444.5 320 70.9
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 5.9e-122 441.4 328 67.7
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.2e-121 439.5 327 68.2
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.8e-121 438.7 327 67.6
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 2.5e-120 436.0 322 68.0
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 5.5e-120 434.9 345 65.5
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-119 433.7 327 66.7
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.6e-119 433.3 327 66.7
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.6e-119 433.3 329 65.3
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.7e-119 432.6 322 67.1
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 4.6e-119 431.8 330 67.9
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 6.1e-119 431.4 322 68.0
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 7.9e-119 431.0 328 66.5
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 7.9e-119 431.0 327 66.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.8e-118 429.9 327 66.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.3e-118 429.5 328 65.2
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.3e-118 429.5 322 65.8
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.3e-118 429.5 321 66.7
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 5.1e-118 428.3 330 67.3
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 6.7e-118 427.9 325 72.6
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 6.7e-118 427.9 325 66.5
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 8.8e-118 427.6 321 67.0
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.5e-117 426.8 329 66.3
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.0e-117 426.4 324 67.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.3e-117 425.6 320 66.2
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 7.4e-117 424.5 314 72.0
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 7.4e-117 424.5 326 66.9
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 9.7e-117 424.1 320 66.2
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.7e-117 424.1 330 67.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.7e-116 423.3 327 65.4
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.2e-116 422.9 329 64.4
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 6.3e-116 421.4 327 65.4
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 6.3e-116 421.4 327 64.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 8.2e-116 421.0 325 66.8
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 8.2e-116 421.0 325 66.5
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 8.2e-116 421.0 329 64.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 8.2e-116 421.0 357 61.3
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.1e-115 420.6 321 65.7
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.1e-115 420.6 325 65.2
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.4e-115 420.2 293 70.6
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.4e-115 420.2 330 67.0
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.4e-115 419.5 327 65.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 4.1e-115 418.7 322 65.5
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 5.3e-115 418.3 329 63.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.9e-115 417.9 330 66.4
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 9.1e-115 417.5 327 65.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.0e-114 416.4 326 65.0
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.6e-114 416.0 327 64.5
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.6e-114 416.0 330 66.1
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.6e-114 416.0 330 66.1
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.5e-114 415.2 327 65.1
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.5e-114 415.2 325 65.2
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.7e-113 413.3 322 64.6
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.2e-113 412.9 327 64.2
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.2e-113 412.9 327 64.8
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 6.5e-113 411.4 362 59.7
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.1e-112 410.6 328 65.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.2e-112 409.1 323 66.9
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.5e-112 408.3 320 63.8
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.6e-111 406.8 319 71.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.6e-111 406.8 322 64.0
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 7.9e-111 404.4 354 60.5
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 2.3e-110 402.9 325 63.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 3.0e-110 402.5 326 64.1
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 3.0e-110 402.5 320 62.8
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 3.0e-110 402.5 325 63.7
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.9e-110 402.1 327 62.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 5.2e-110 401.7 325 64.0
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 6.7e-110 401.4 323 65.0
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 3.3e-109 399.1 321 63.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 4.4e-109 398.7 326 62.6
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.4e-109 397.9 327 62.4
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 9.7e-109 397.5 320 62.5
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.8e-108 396.0 319 61.1
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.3e-108 394.8 326 62.6
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 6.3e-108 394.8 276 71.4
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 3.1e-107 392.5 320 63.1
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.1e-107 392.1 331 60.7
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 8.5e-105 384.4 326 59.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-103 380.6 398 53.8
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.3e-101 372.5 326 58.3
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 7.5e-101 371.3 326 59.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.2e-98 364.0 271 66.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.9e-96 356.7 317 58.4
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 9.4e-96 354.4 323 54.5
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.6e-95 353.6 327 56.6
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 2.1e-95 353.2 326 55.8
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.4e-91 338.6 320 56.9
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 8.6e-89 331.3 324 54.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.0e-87 324.7 325 58.5
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.6e-81 305.1 320 49.7
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-80 303.1 178 86.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.6e-77 293.1 313 48.9
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 9.8e-77 291.2 325 51.1
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.2e-76 290.0 275 57.8
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.2e-74 284.3 320 50.0
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.6e-71 273.9 177 77.4
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 3.0e-65 253.1 279 46.6
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 8.9e-62 241.5 193 62.2
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-60 237.3 262 51.9
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-59 234.6 320 44.4
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.6e-58 229.2 192 59.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.3e-57 227.6 307 41.4
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.1e-54 216.5 198 57.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 7.6e-53 211.8 188 60.1
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-50 203.8 142 67.6
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.6e-49 198.7 131 71.0
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.8e-47 193.4 133 68.4
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.0e-46 189.5 155 64.5
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 3.4e-45 186.4 157 58.6
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.8e-45 185.7 140 65.7
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.2e-44 183.7 131 67.2
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.4e-43 181.0 135 61.5
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 6.6e-41 172.2 265 39.2
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-40 171.0 215 47.4
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 7.3e-40 168.7 261 39.1
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.6e-39 167.5 261 37.5
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 2.0e-37 160.6 128 62.5
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.7e-36 157.5 146 53.4
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.1e-34 150.6 174 46.0
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.5e-32 143.7 93 83.9
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-32 143.7 93 83.9
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.3e-32 143.3 196 38.8
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.3e-32 142.9 140 50.7
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 2.8e-31 140.2 93 81.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.2e-29 134.8 117 69.2
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.2e-29 134.8 99 67.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 5.8e-29 132.5 137 51.1
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 7.6e-29 132.1 126 51.6
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 9.9e-29 131.7 114 57.9
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.4e-27 127.1 195 39.0
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.2e-26 124.8 80 68.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.3e-24 116.7 117 50.4
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 4.5e-21 106.3 68 73.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 2.3e-17 94.0 61 85.2
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 6.7e-17 92.4 189 36.0
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 3.3e-16 90.1 60 78.3
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.6e-10 71.2 60 61.7
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 2.3e-09 67.4 45 75.6


User provided reference genes

Program Settings