Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 5.4e-192 675.6 940 100.0
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 9.5e-181 638.3 944 98.0
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 6.0e-175 619.0 945 97.4
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.1e-168 598.2 974 85.0
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 8.7e-150 535.4 360 87.5
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.2e-146 525.0 364 85.7
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 9.3e-144 515.4 364 83.5
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.6e-140 504.6 370 84.1
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 8.4e-137 492.3 948 91.2
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.6e-122 444.1 947 88.7
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.7e-111 407.5 360 72.2
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 2.6e-109 401.0 362 65.5
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.3e-81 308.9 364 56.0
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 2.9e-81 307.8 356 54.2
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 3.6e-79 300.8 276 59.4
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 4.7e-79 300.4 346 50.9
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.4e-78 298.9 283 59.4
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.3e-78 298.1 361 51.8
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.8e-78 296.6 341 51.6
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 6.8e-78 296.6 249 64.3
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.8e-78 296.6 277 57.0
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.5e-77 295.4 340 51.5
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 7.5e-77 293.1 355 53.5
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 7.5e-77 293.1 277 60.3
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.3e-76 292.4 282 59.6
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.9e-76 291.2 348 52.0
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.7e-76 290.8 350 50.9
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 4.9e-76 290.4 331 52.6
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 8.3e-76 289.7 299 58.2
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.1e-75 289.3 244 63.9
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.1e-75 289.3 253 59.3
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.4e-75 288.9 243 63.8
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.9e-75 288.5 300 54.7
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 5.4e-75 287.0 244 63.9
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 9.2e-75 286.2 319 54.9
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 1.2e-74 285.8 244 65.6
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.2e-74 285.8 360 50.0
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.6e-74 285.4 345 58.3
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.0e-74 285.0 302 55.3
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 3.5e-74 284.3 340 52.9
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 3.5e-74 284.3 296 53.4
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 3.5e-74 284.3 240 65.8
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.0e-73 282.7 287 57.8
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.3e-73 281.6 384 46.9
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 3.9e-73 280.8 305 53.8
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.5e-72 278.9 337 53.1
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 4.3e-72 277.3 308 52.6
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 4.3e-72 277.3 355 52.1
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 5.6e-72 276.9 291 54.6
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.2e-71 275.8 238 60.5
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.6e-71 275.4 190 72.1
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 2.8e-71 274.6 274 54.7
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 3.6e-71 274.2 352 47.4
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 8.0e-71 273.1 355 50.1
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.4e-70 272.3 308 54.9
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.1e-70 271.2 293 57.0
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 4.0e-70 270.8 309 54.4
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 5.2e-70 270.4 290 54.1
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 5.2e-70 270.4 320 49.7
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 5.2e-70 270.4 281 55.9
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.2e-69 269.2 277 57.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 1.2e-69 269.2 302 50.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.6e-69 268.1 369 48.5
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.4e-69 267.7 253 58.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 7.5e-69 266.5 273 54.6
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 1.3e-68 265.8 303 53.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.3e-68 265.8 308 52.6
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.7e-68 265.4 306 52.3
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.7e-68 265.4 299 50.8
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.7e-68 265.4 353 47.0
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 3.7e-68 264.2 343 48.4
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 8.3e-68 263.1 305 51.8
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.9e-67 261.9 352 47.2
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.2e-66 259.2 297 52.2
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.6e-66 258.8 290 53.1
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.6e-66 258.8 284 53.9
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 2.1e-66 258.5 334 48.2
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 3.5e-66 257.7 350 46.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 7.8e-66 256.5 280 53.6
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 7.8e-66 256.5 280 53.6
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.7e-65 255.4 341 47.8
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 6.6e-65 253.4 331 52.3
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.6e-63 248.8 344 49.1
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.8e-63 248.1 300 52.3
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 8.1e-63 246.5 292 49.7
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 5.2e-62 243.8 298 49.7
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.1e-59 236.1 295 50.5
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.4e-59 235.0 240 55.8
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 3.0e-57 228.0 294 50.7
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 8.6e-57 226.5 247 51.4
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.1e-56 226.1 244 50.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.5e-56 224.9 283 45.9
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.2e-53 216.1 292 54.1
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.3e-52 212.6 154 67.5
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.8e-52 211.1 311 46.6
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 7.8e-50 203.4 190 55.3
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.3e-48 197.6 147 66.7
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 3.6e-47 194.5 135 71.9
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.8e-46 192.2 169 54.4
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 9.0e-46 189.9 156 57.7
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 5.3e-38 164.1 190 41.6
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 5.8e-37 160.6 94 85.1
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.7e-36 159.1 132 63.6
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 2.2e-36 158.7 203 49.3
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 2.4e-35 155.2 204 41.7
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 5.4e-35 154.1 183 41.5
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 6.2e-31 140.6 99 71.7
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 4.5e-29 134.4 104 67.3
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-28 132.9 200 42.0
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 2.2e-28 132.1 200 38.5
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 4.9e-28 131.0 101 65.3
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.4e-28 130.6 187 40.1
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.1e-27 129.8 92 68.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.5e-27 128.6 187 40.1
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 3.2e-27 128.3 103 59.2
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 4.2e-27 127.9 110 58.2
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 4.2e-27 127.9 93 65.6
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.1e-27 127.1 91 62.6
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.7e-26 125.2 115 57.4
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 6.0e-26 124.0 116 56.9
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 7.9e-26 123.6 88 73.9
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 7.9e-26 123.6 99 61.6
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 7.9e-26 123.6 111 58.6
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.9e-25 121.3 202 33.2
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.6e-24 117.5 98 58.2
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 1.6e-23 115.9 87 71.3
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.9e-22 110.5 105 55.2
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.2e-21 109.8 122 54.1
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.5e-20 104.0 78 57.7
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.9e-19 102.4 78 64.1
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 6.0e-18 97.4 72 66.7
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 6.7e-17 94.0 59 72.9
BcaC02g08511 Brassica carinata HOM05D005462 ORTHO05D006718 5.9e-13 80.9 64 70.3
C02p02080 Brassica napus HOM05D000001 ORTHO05D002611 7.7e-13 80.5 52 76.9
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 2.2e-12 79.0 46 78.3
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 1.9e-11 75.9 44 81.8
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 1.9e-11 75.9 44 81.8
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.7e-09 67.4 74 51.4
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 1.3e-07 63.2 151 27.8
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 8.2e-07 60.5 45 64.4
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 8.2e-07 60.5 88 34.1
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 1.1e-06 60.1 85 32.9
Duzib264G0472 Durio zibethinus HOM05D000285 ORTHO05D000241 1.4e-06 59.7 102 37.3
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 1.4e-06 59.7 81 37.0
Eucgr.F02224 Eucalyptus grandis HOM05D000285 ORTHO05D000241 3.1e-06 58.5 74 37.8
HanXRQChr14g0451091 Helianthus annuus HOM05D000142 ORTHO05D001253 3.1e-06 58.5 141 31.9
BraA02t04825Z Brassica rapa HOM05D000001 ORTHO05D002611 4.1e-06 58.2 44 70.5
Migut.M01417 Erythranthe guttata HOM05D000285 ORTHO05D000241 4.1e-06 58.2 91 36.3
HanXRQChr01g0005101 Helianthus annuus HOM05D000285 ORTHO05D000241 4.1e-06 58.2 74 37.8
Lalb_Chr04g0248031 Lupinus albus HOM05D000285 ORTHO05D000241 4.1e-06 58.2 74 37.8
Zm00001eb116460 Zea mays HOM05D000285 ORTHO05D000241 4.1e-06 58.2 74 37.8
Zm00001eb302580 Zea mays HOM05D000285 ORTHO05D000241 4.1e-06 58.2 74 37.8
PSO210G6644 Papaver somniferum HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 36.5
PSO302G0304 Papaver somniferum HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 36.5
MBI06_g02336_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D001253 6.9e-06 57.4 77 37.7
Os08g0320100 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 6.9e-06 57.4 82 34.1
THA.LOC104813442 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 6.9e-06 57.4 74 37.8
Zm00001eb302640 Zea mays HOM05D000285 ORTHO05D000241 6.9e-06 57.4 74 37.8
Lalb_Chr18g0057081 Lupinus albus HOM05D000285 ORTHO05D000241 9.1e-06 57.0 74 36.5
Zm00001eb028170 Zea mays HOM05D000285 ORTHO05D000241 9.1e-06 57.0 82 35.4


User provided reference genes

Program Settings