Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p23650 Brassica napus HOM05D003409 ORTHO05D004015 7.9e-106 387.1 194 100.0
BcaC07g37821 Brassica carinata HOM05D003409 ORTHO05D004015 8.8e-81 303.9 204 80.9
BcaC03g15509 Brassica carinata HOM05D003409 ORTHO05D004015 1.6e-77 293.1 204 78.4
A02p19390 Brassica napus HOM05D003409 ORTHO05D004015 3.2e-75 285.4 204 76.5
BolC2t10305H Brassica oleracea HOM05D003409 ORTHO05D004015 8.0e-74 280.8 187 80.2
C08p21680 Brassica napus HOM05D003409 ORTHO05D004015 4.8e-71 271.6 189 78.3
Sp6g17770 Schrenkiella parvula HOM05D003409 ORTHO05D004015 2.3e-65 252.7 188 72.3
BolC8t48208H Brassica oleracea HOM05D003409 ORTHO05D004015 1.2e-64 250.4 187 73.8
BolC2t07681H Brassica oleracea HOM05D003409 ORTHO05D004015 4.4e-64 248.4 185 73.0
BcaB05g22238 Brassica carinata HOM05D003409 ORTHO05D004015 6.3e-63 244.6 160 78.8
BcaC07g39178 Brassica carinata HOM05D003409 ORTHO05D004015 8.3e-63 244.2 199 69.3
BcaC04g20188 Brassica carinata HOM05D003409 ORTHO05D004015 9.1e-62 240.7 182 70.9
C09p46870 Brassica napus HOM05D003409 ORTHO05D004015 9.1e-62 240.7 182 70.9
BolC9t57537H Brassica oleracea HOM05D003409 ORTHO05D004015 9.1e-62 240.7 182 70.9
C02p15740 Brassica napus HOM05D003409 ORTHO05D004015 1.2e-61 240.4 155 80.0
BraA10t43407Z Brassica rapa HOM05D003409 ORTHO05D004015 1.2e-61 240.4 182 70.9
A02p09450 Brassica napus HOM05D003409 ORTHO05D004015 1.6e-61 240.0 161 77.6
A10p13110 Brassica napus HOM05D003409 ORTHO05D004015 1.6e-61 240.0 182 70.9
BraA02t06009Z Brassica rapa HOM05D003409 ORTHO05D004015 1.6e-61 240.0 161 77.6
Thhalv10012859m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 1.0e-60 237.3 161 76.4
BcaB08g35958 Brassica carinata HOM05D003409 ORTHO05D004015 2.2e-60 236.1 182 68.7
Carub.0008s1625 Capsella rubella HOM05D003409 ORTHO05D004015 1.8e-57 226.5 158 72.8
AT5G55920 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 3.0e-57 225.7 158 72.8
AL8G31480 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 5.2e-57 224.9 160 71.9
Sp7g24560 Schrenkiella parvula HOM05D003409 ORTHO05D004015 4.9e-55 218.4 157 70.1
BcaC09g50636 Brassica carinata HOM05D003409 ORTHO05D004015 6.3e-55 218.0 157 70.7
A01p17840 Brassica napus HOM05D003409 ORTHO05D004015 6.3e-55 218.0 157 70.7
C01p22640 Brassica napus HOM05D003409 ORTHO05D004015 6.3e-55 218.0 157 70.7
BolC1t02194H Brassica oleracea HOM05D003409 ORTHO05D004015 6.3e-55 218.0 157 70.7
BraA01t01740Z Brassica rapa HOM05D003409 ORTHO05D004015 1.8e-54 216.5 157 70.1
Thhalv10024758m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 4.1e-54 215.3 157 70.1
THA.LOC104817712 Tarenaya hassleriana HOM05D003409 ORTHO05D004015 4.1e-54 215.3 157 70.7
BcaNung02400 Brassica carinata HOM05D003409 ORTHO05D004015 9.2e-54 214.2 157 69.4
Aa31LG5G11970 Aethionema arabicum HOM05D003409 ORTHO05D004015 1.2e-53 213.8 164 67.7
CARHR234180 Cardamine hirsuta HOM05D003409 ORTHO05D004015 3.5e-53 212.2 157 68.2
CARHR269290 Cardamine hirsuta HOM05D003409 ORTHO05D004015 4.5e-53 211.8 158 69.0
Carub.0007s1427 Capsella rubella HOM05D003409 ORTHO05D004015 1.1e-51 207.2 157 67.5
Eucgr.C03787 Eucalyptus grandis HOM05D003409 ORTHO05D004015 7.3e-51 204.5 181 61.3
GSVIVG01014717001 Vitis vinifera HOM05D003409 ORTHO05D004015 1.6e-50 203.4 157 67.5
AL7G26290 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 2.1e-50 203.0 183 60.7
Ciclev10007740m.g Citrus clementina HOM05D003409 ORTHO05D004015 2.8e-50 202.6 181 60.2
Cpa.g.sc12.127 Carica papaya HOM05D003409 ORTHO05D004015 6.1e-50 201.4 157 67.5
PGR083G1781 Punica granatum HOM05D003409 ORTHO05D004015 1.0e-49 200.7 157 65.0
Cfa016917 Carpinus fangiana HOM05D003409 ORTHO05D004015 2.3e-49 199.5 181 59.1
QL08p003492 Quercus lobata HOM05D003409 ORTHO05D004015 2.3e-49 199.5 181 59.7
Dinv10352 Davidia involucrata HOM05D003409 ORTHO05D004015 3.0e-49 199.1 157 67.5
Lj6g0020357 Lotus japonicus HOM05D003409 ORTHO05D004015 4.0e-49 198.7 157 65.0
AT4G26600 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 5.2e-49 198.4 183 59.0
Lj1A892G90 Lonicera japonica HOM05D003409 ORTHO05D004015 5.2e-49 198.4 186 59.7
Aa31LG3G11830 Aethionema arabicum HOM05D003409 ORTHO05D004015 6.8e-49 198.0 200 57.0
CANSAT11G2129 Cannabis sativa HOM05D003409 ORTHO05D004015 6.8e-49 198.0 181 59.7
Hund01871 Selenicereus undatus HOM05D003409 ORTHO05D004015 6.8e-49 198.0 157 64.3
CiPaw.11G205600 Carya illinoinensis HOM05D003409 ORTHO05D004015 8.9e-49 197.6 172 63.4
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea HOM05D003409 ORTHO05D004015 1.2e-48 197.2 157 65.0
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.2e-48 197.2 157 66.9
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.2e-48 197.2 157 66.9
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea HOM05D003409 ORTHO05D004015 1.5e-48 196.8 157 65.0
HPP92_010888 Vanilla planifolia HOM05D003409 ORTHO05D004015 1.5e-48 196.8 183 57.4
HPP92_010890 Vanilla planifolia HOM05D003409 ORTHO05D004015 1.5e-48 196.8 183 57.4
Nn4g24629 Nelumbo nucifera HOM05D003409 ORTHO05D004015 2.0e-48 196.4 181 59.7
Prupe.8G036800 Prunus persica HOM05D003409 ORTHO05D004015 3.4e-48 195.7 157 65.0
Hund01870 Selenicereus undatus HOM05D003409 ORTHO05D004015 4.4e-48 195.3 157 63.7
ATR0751G119 Amborella trichopoda HOM05D003409 ORTHO05D004015 9.8e-48 194.1 157 65.6
PGSC0003DMG400022346 Solanum tuberosum HOM05D003409 ORTHO05D004015 9.8e-48 194.1 157 65.0
Glyma.18G075000 Glycine max HOM05D003409 ORTHO05D004015 1.3e-47 193.7 181 58.6
Lsat_1_v5_gn_2_49000 Lactuca sativa HOM05D003409 ORTHO05D004015 1.3e-47 193.7 157 63.7
Nitab4.5_0002789g0050 Nicotiana tabacum HOM05D003409 ORTHO05D004015 1.3e-47 193.7 157 65.0
Solyc02g079415.1 Solanum lycopersicum HOM05D003409 ORTHO05D004015 1.3e-47 193.7 157 65.0
Sopen02g024220 Solanum pennellii HOM05D003409 ORTHO05D004015 1.3e-47 193.7 157 65.0
Sc03g0011610 Simmondsia chinensis HOM05D003409 ORTHO05D004015 1.7e-47 193.4 157 65.6
Solyc07g052110.4 Solanum lycopersicum HOM05D003409 ORTHO05D004015 1.7e-47 193.4 157 65.0
Sopen07g025740 Solanum pennellii HOM05D003409 ORTHO05D004015 2.2e-47 193.0 181 59.7
VMungo0540G1920 Vigna mungo HOM05D003409 ORTHO05D004015 2.2e-47 193.0 155 65.2
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.9e-47 192.6 158 63.3
Medtr3g460700 Medicago truncatula HOM05D003409 ORTHO05D004015 3.7e-47 192.2 157 63.7
SGA_v2.0_scaffold1G00379 Striga asiatica HOM05D003409 ORTHO05D004015 3.7e-47 192.2 155 66.5
Actinidia35412 Actinidia chinensis HOM05D003409 ORTHO05D004015 6.4e-47 191.4 157 65.6
FAN07G2833 Fragaria x ananassa HOM05D003409 ORTHO05D004015 6.4e-47 191.4 158 63.3
Glyma.08G332000 Glycine max HOM05D003409 ORTHO05D004015 6.4e-47 191.4 155 64.5
Psat5g165320 Pisum sativum HOM05D003409 ORTHO05D004015 6.4e-47 191.4 157 63.7
CAN.G424.40 Capsicum annuum HOM05D003409 ORTHO05D004015 8.3e-47 191.0 157 64.3
FvH4_4g11570 Fragaria vesca HOM05D003409 ORTHO05D004015 8.3e-47 191.0 158 63.3
FAN12G1033 Fragaria x ananassa HOM05D003409 ORTHO05D004015 8.3e-47 191.0 158 63.3
FAN12G3679 Fragaria x ananassa HOM05D003409 ORTHO05D004015 8.3e-47 191.0 158 63.3
Atru.chr2.3736 Acer truncatum HOM05D003409 ORTHO05D004015 1.1e-46 190.7 157 63.7
Atru.chr2.3741 Acer truncatum HOM05D003409 ORTHO05D004015 1.1e-46 190.7 157 63.7
FAN17G0359 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.1e-46 190.7 158 63.3
FAN17G1343 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.1e-46 190.7 158 63.3
HanXRQChr11g0342791 Helianthus annuus HOM05D003409 ORTHO05D004015 1.1e-46 190.7 182 57.7
Oeu039418.1 Olea europaea HOM05D003409 ORTHO05D004015 1.1e-46 190.7 157 64.3
SGA_v2.0_scaffold42G15966 Striga asiatica HOM05D003409 ORTHO05D004015 1.4e-46 190.3 155 65.8
TPR.G17957 Trifolium pratense HOM05D003409 ORTHO05D004015 1.4e-46 190.3 161 62.7
CSS0010821 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 1.8e-46 189.9 157 64.3
ECA248G0890 Erigeron canadensis HOM05D003409 ORTHO05D004015 1.8e-46 189.9 180 58.3
Lalb_Chr15g0082251 Lupinus albus HOM05D003409 ORTHO05D004015 1.8e-46 189.9 157 62.4
RcHm_v2.0_Chr4g0408681 Rosa chinensis HOM05D003409 ORTHO05D004015 1.8e-46 189.9 181 56.9
FAN04G1394 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.4e-46 189.5 158 62.7
SalBow5G1153 Salvia bowleyana HOM05D003409 ORTHO05D004015 3.2e-46 189.1 157 64.3
Aqoxy1G01862 Aquilegia oxysepala HOM05D003409 ORTHO05D004015 4.1e-46 188.7 158 63.9
MD04G1044800 Malus domestica HOM05D003409 ORTHO05D004015 5.4e-46 188.3 181 57.5
Migut.H01746 Erythranthe guttata HOM05D003409 ORTHO05D004015 7.0e-46 188.0 157 63.1
Manes.11G044000 Manihot esculenta HOM05D003409 ORTHO05D004015 7.0e-46 188.0 181 56.9
vmacro15782 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 7.0e-46 188.0 173 59.5
Oeu005478.2 Olea europaea HOM05D003409 ORTHO05D004015 9.2e-46 187.6 157 63.7
Cc04_g00350 Coffea canephora HOM05D003409 ORTHO05D004015 1.2e-45 187.2 155 63.9
Peaxi162Scf00057g02234 Petunia axillaris HOM05D003409 ORTHO05D004015 1.2e-45 187.2 155 63.9
Haze_09846 Corylus avellana HOM05D003409 ORTHO05D004015 1.6e-45 186.8 144 66.7
Phvul.006G059200 Phaseolus vulgaris HOM05D003409 ORTHO05D004015 1.6e-45 186.8 155 63.2
Nitab4.5_0000160g0180 Nicotiana tabacum HOM05D003409 ORTHO05D004015 2.0e-45 186.4 186 55.9
PSO210G2179 Papaver somniferum HOM05D003409 ORTHO05D004015 2.0e-45 186.4 155 65.2
PSO210G5345 Papaver somniferum HOM05D003409 ORTHO05D004015 2.0e-45 186.4 155 65.2
Lalb_Chr20g0114091 Lupinus albus HOM05D003409 ORTHO05D004015 2.7e-45 186.0 157 61.8
DCAR_017070 Daucus carota HOM05D003409 ORTHO05D004015 4.6e-45 185.3 157 63.1
Potri.001G369600 Populus trichocarpa HOM05D003409 ORTHO05D004015 4.6e-45 185.3 181 55.8
PSO478G4279 Papaver somniferum HOM05D003409 ORTHO05D004015 5.9e-45 184.9 157 64.3
unitig_578.g16234 Utricularia gibba HOM05D003409 ORTHO05D004015 7.8e-45 184.5 155 63.9
AUR62017142 Chenopodium quinoa HOM05D003409 ORTHO05D004015 1.0e-44 184.1 179 55.9
AUR62035665 Chenopodium quinoa HOM05D003409 ORTHO05D004015 1.0e-44 184.1 179 55.9
Pp3c1_15210 Physcomitrium patens HOM05D003409 ORTHO05D004015 1.0e-44 184.1 182 52.7
Sabra16G0242500 Salix brachista HOM05D003409 ORTHO05D004015 1.0e-44 184.1 181 55.2
TWI39G0812 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 1.3e-44 183.7 157 61.1
Duzib213G0349 Durio zibethinus HOM05D003409 ORTHO05D004015 1.7e-44 183.3 157 62.4
Eucgr.F02036 Eucalyptus grandis HOM05D003409 ORTHO05D004015 3.0e-44 182.6 181 56.9
TWI38G2383 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 3.0e-44 182.6 157 61.1
Thecc.07G009800 Theobroma cacao HOM05D003409 ORTHO05D004015 5.0e-44 181.8 157 61.8
CsaV3_7G011550 Cucumis sativus L. HOM05D003409 ORTHO05D004015 1.1e-43 180.6 143 65.7
MELO3C024955.2 Cucumis melo HOM05D003409 ORTHO05D004015 1.5e-43 180.3 143 65.7
ClCG09G021450 Citrullus lanatus HOM05D003409 ORTHO05D004015 3.3e-43 179.1 182 55.5
Gohir.A01G093200 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.3e-43 179.1 157 60.5
Gohir.A13G131500 Gossypium hirsutum HOM05D003409 ORTHO05D004015 5.6e-43 178.3 157 60.5
EL10Ac4g07529 Beta vulgaris HOM05D003409 ORTHO05D004015 7.3e-43 177.9 181 54.7
COL.COLO4_07725 Corchorus olitorius HOM05D003409 ORTHO05D004015 7.3e-43 177.9 181 54.1
Rhsim10G0056000 Rhododendron simsii HOM05D003409 ORTHO05D004015 7.3e-43 177.9 176 57.4
Gorai.002G102200 Gossypium raimondii HOM05D003409 ORTHO05D004015 9.5e-43 177.6 157 59.9
Sed0016663 Sechium edule HOM05D003409 ORTHO05D004015 9.5e-43 177.6 142 64.8
Gorai.013G151300 Gossypium raimondii HOM05D003409 ORTHO05D004015 1.6e-42 176.8 157 59.9
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis HOM05D003409 ORTHO05D004015 3.6e-42 175.6 157 58.6
Gohir.D01G077700 Gossypium hirsutum HOM05D003409 ORTHO05D004015 4.7e-42 175.3 157 59.2
Gohir.D13G135000 Gossypium hirsutum HOM05D003409 ORTHO05D004015 6.2e-42 174.9 157 59.2
Rhsim06G0084600 Rhododendron simsii HOM05D003409 ORTHO05D004015 8.0e-42 174.5 176 56.8
Ca_12445_v3 Cicer arietinum L. HOM05D003409 ORTHO05D004015 1.4e-41 173.7 171 56.7
SEGI_08867 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 6.8e-41 171.4 157 58.0
Zm00001eb253180 Zea mays HOM05D003409 ORTHO05D004015 6.8e-41 171.4 182 52.7
SMO367G0604 Selaginella moellendorffii HOM05D003409 ORTHO05D004015 8.9e-41 171.0 158 57.0
Os09g0551300 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 1.2e-40 170.6 182 52.2
vmacro11609 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 1.2e-40 170.6 208 51.4
Lsat_1_v5_gn_1_7960 Lactuca sativa HOM05D003409 ORTHO05D004015 5.8e-40 168.3 157 58.6
Os02g0724600 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 7.5e-40 167.9 182 51.6
Zm00001eb189070 Zea mays HOM05D003409 ORTHO05D004015 9.8e-40 167.5 182 51.6
Actinidia37139 Actinidia chinensis HOM05D003409 ORTHO05D004015 3.7e-39 165.6 119 68.9
CDE07G1104 Ceratophyllum demersum HOM05D003409 ORTHO05D004015 1.6e-37 160.2 148 59.5
Mapoly0034s0108 Marchantia polymorpha HOM05D003409 ORTHO05D004015 2.7e-37 159.5 157 52.9
C03p85060 Brassica napus HOM05D003409 ORTHO05D004015 7.8e-37 157.9 199 51.8
CBR_g8798 Chara braunii HOM05D003409 ORTHO05D004015 1.7e-36 156.8 153 53.6
Dinv40878 Davidia involucrata HOM05D003409 ORTHO05D004015 1.1e-33 147.5 104 69.2
MBI14_g18948_MAGBIO Magnolia biondii HOM05D003409 ORTHO05D004015 1.4e-33 147.1 157 54.8
PRCOL_00002474 Prasinoderma coloniale HOM05D003409 ORTHO05D004015 3.4e-32 142.5 153 46.4
C02p15590 Brassica napus HOM05D003409 ORTHO05D004015 3.7e-31 139.0 165 51.5
MCO14G316 Micromonas commoda HOM05D003409 ORTHO05D004015 5.4e-30 135.2 136 52.9
Cre06.g273413 Chlamydomonas reinhardtii HOM05D003409 ORTHO05D004015 1.1e-27 127.5 155 44.5
CiPaw.12G139700 Carya illinoinensis HOM05D003409 ORTHO05D004015 6.4e-23 111.7 70 74.3
Cfa025549 Carpinus fangiana HOM05D003409 ORTHO05D004015 1.3e-20 104.0 174 39.1
TAR383G0304 Trochodendron aralioides HOM05D003409 ORTHO05D004015 3.6e-18 95.9 180 37.8
CSS0004269 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 4.2e-14 82.4 69 62.3
Ah.01g014980 Amaranthus hybridus HOM05D003409 ORTHO05D004015 3.9e-12 75.9 88 51.1
CAN.G1245.14 Capsicum annuum HOM05D003487 ORTHO05D000140 6.6e-12 75.1 41 82.9
CAN.G618.4 Capsicum annuum HOM05D003409 ORTHO05D004015 3.1e-09 66.2 55 61.8
SEGI_06120 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 3.1e-09 66.2 81 49.4
C03p75670 Brassica napus HOM05D003409 ORTHO05D023923 6.9e-09 65.1 95 42.1
C09p31870 Brassica napus HOM05D000263 ORTHO05D040446 1.1e-06 57.8 48 62.5
SGA_v2.0_scaffold332G48953 Striga asiatica HOM05D003409 ORTHO05D011352 4.2e-06 55.8 52 53.8
BolC9t56044H Brassica oleracea HOM05D000263 ORTHO05D040446 7.1e-06 55.1 48 60.4
BcaC01g00091 Brassica carinata HOM05D002514 ORTHO05D023923 9.3e-06 54.7 35 74.3


User provided reference genes

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