Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p17400 Brassica napus HOM05D029713 ORTHO05D027326 2.5e-103 378.6 176 100.0
C09p21680 Brassica napus HOM05D029713 ORTHO05D027326 2.5e-58 229.2 146 79.5
BolC9t55069H Brassica oleracea HOM05D029713 ORTHO05D027326 1.6e-57 226.5 146 78.8
BcaC04g22250 Brassica carinata HOM05D029713 ORTHO05D027326 4.7e-57 224.9 146 78.8
AL2G15940 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 1.7e-38 163.3 236 44.9
Sp2g04070 Schrenkiella parvula HOM05D003978 ORTHO05D006033 7.3e-34 147.9 241 41.1
CARHR052280 Cardamine hirsuta HOM05D003978 ORTHO05D006033 8.1e-33 144.4 241 42.7
AT1G60650 Arabidopsis thaliana HOM05D003978 ORTHO05D006033 1.1e-32 144.1 238 39.5
Thhalv10023624m.g Eutrema salsugineum HOM05D003978 ORTHO05D006033 3.1e-32 142.5 237 41.8
C01p37200 Brassica napus HOM05D003978 ORTHO05D006033 2.9e-30 136.0 215 43.3
Eucgr.J01044 Eucalyptus grandis HOM05D003978 ORTHO05D006033 2.7e-28 129.4 235 38.3
GSVIVG01016195001 Vitis vinifera HOM05D003978 ORTHO05D006033 3.0e-27 125.9 232 37.5
CiPaw.02G171600 Carya illinoinensis HOM05D003978 ORTHO05D006033 5.1e-27 125.2 233 36.1
THA.LOC104809978 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 5.1e-27 125.2 246 37.8
Cc02_g10770 Coffea canephora HOM05D003978 ORTHO05D006033 1.5e-26 123.6 230 37.8
QL08p053633 Quercus lobata HOM05D003978 ORTHO05D006033 1.5e-26 123.6 236 36.9
CSS0027147 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 1.9e-26 123.2 231 37.2
CSS0034790 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 1.9e-26 123.2 231 37.2
TPR.G26271 Trifolium pratense HOM05D003978 ORTHO05D006033 4.3e-26 122.1 235 35.7
CiPaw.01G267500 Carya illinoinensis HOM05D003978 ORTHO05D006033 7.3e-26 121.3 226 40.7
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 2.8e-25 119.4 232 40.1
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea HOM05D003978 ORTHO05D006033 2.8e-25 119.4 232 40.1
Carub.0002s0468 Capsella rubella HOM05D003978 ORTHO05D006033 2.8e-25 119.4 241 38.6
Peaxi162Scf00253g00327 Petunia axillaris HOM05D003978 ORTHO05D006033 8.1e-25 117.9 179 43.6
Lj5g0022774 Lotus japonicus HOM05D003978 ORTHO05D006033 2.4e-24 116.3 238 36.6
CSS0005536 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 5.2e-24 115.2 241 36.1
CsaV3_2G021100 Cucumis sativus L. HOM05D003978 ORTHO05D006033 5.2e-24 115.2 239 36.4
Lalb_Chr19g0129381 Lupinus albus HOM05D003978 ORTHO05D006033 5.2e-24 115.2 233 39.1
Ciclev10032520m.g Citrus clementina HOM05D003978 ORTHO05D006033 6.9e-24 114.8 233 34.3
DCAR_006405 Daucus carota HOM05D003978 ORTHO05D006033 6.9e-24 114.8 236 36.4
CsaV3_2G020900 Cucumis sativus L. HOM05D003978 ORTHO05D006033 9.0e-24 114.4 203 38.4
MELO3C012401.2 Cucumis melo HOM05D003978 ORTHO05D006033 1.2e-23 114.0 241 37.3
CsaV3_5G036020 Cucumis sativus L. HOM05D001446 ORTHO05D001360 1.2e-23 114.0 240 37.5
Sabra10G0177400 Salix brachista HOM05D003978 ORTHO05D006033 1.2e-23 114.0 233 36.1
MSTRG.9145 Avicennia marina HOM05D003978 ORTHO05D006033 2.0e-23 113.2 244 38.5
Glyma.20G113200 Glycine max HOM05D003978 ORTHO05D006033 2.6e-23 112.8 234 36.8
Glyma.10G276500 Glycine max HOM05D003978 ORTHO05D006033 3.4e-23 112.5 235 37.9
Ca_11194_v3 Cicer arietinum L. HOM05D003978 ORTHO05D006033 4.4e-23 112.1 232 34.5
Duzib114G0897 Durio zibethinus HOM05D003978 ORTHO05D006033 7.6e-23 111.3 232 35.8
TWI38G1352 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 7.6e-23 111.3 239 33.9
Manes.10G051200 Manihot esculenta HOM05D003978 ORTHO05D006033 9.9e-23 110.9 237 35.9
ClCG05G021270 Citrullus lanatus HOM05D003978 ORTHO05D006033 1.3e-22 110.5 243 35.8
Nitab4.5_0002285g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 1.3e-22 110.5 245 35.5
Potri.010G228700 Populus trichocarpa HOM05D003978 ORTHO05D006033 1.3e-22 110.5 237 35.9
Migut.F01713 Erythranthe guttata HOM05D003978 ORTHO05D006033 1.7e-22 110.2 243 35.8
Nitab4.5_0001359g0090 Nicotiana tabacum HOM05D003978 ORTHO05D006033 1.7e-22 110.2 229 37.1
Sabra08G0021900 Salix brachista HOM05D003978 ORTHO05D006033 1.7e-22 110.2 236 36.9
Nitab4.5_0001278g0040 Nicotiana tabacum HOM05D003978 ORTHO05D006033 2.2e-22 109.8 228 36.8
CANSAT64G1994 Cannabis sativa HOM05D003978 ORTHO05D006033 2.9e-22 109.4 240 35.4
Gohir.A10G201200 Gossypium hirsutum HOM05D003978 ORTHO05D006033 3.8e-22 109.0 229 38.0
Nitab4.5_0001450g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 3.8e-22 109.0 238 36.1
Sed0020000 Sechium edule HOM05D003978 ORTHO05D006033 3.8e-22 109.0 240 37.5
Lsat_1_v5_gn_2_113200 Lactuca sativa HOM05D003978 ORTHO05D006033 4.9e-22 108.6 242 33.5
Sed0011758 Sechium edule HOM05D003978 ORTHO05D006033 4.9e-22 108.6 244 35.7
TAR623G0946 Trochodendron aralioides HOM05D003978 ORTHO05D006033 6.4e-22 108.2 236 35.6
Sopen03g019840 Solanum pennellii HOM05D003978 ORTHO05D006033 8.4e-22 107.8 228 36.8
PGR044G1831 Punica granatum HOM05D003978 ORTHO05D006033 1.4e-21 107.1 237 34.6
Rhsim03G0089800 Rhododendron simsii HOM05D003978 ORTHO05D006033 1.4e-21 107.1 215 37.7
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 1.4e-21 107.1 229 35.4
Aqoxy2G01695 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 1.9e-21 106.7 234 35.0
Lj3A937G87 Lonicera japonica HOM05D003978 ORTHO05D006033 1.9e-21 106.7 237 32.9
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 1.9e-21 106.7 228 36.8
THA.LOC104816430 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 4.2e-21 105.5 252 34.1
Gohir.D10G209000 Gossypium hirsutum HOM05D003978 ORTHO05D006033 5.4e-21 105.1 229 37.6
Gorai.011G235100 Gossypium raimondii HOM05D003978 ORTHO05D006033 5.4e-21 105.1 229 37.6
Duzib128G0911 Durio zibethinus HOM05D003978 ORTHO05D006033 7.1e-21 104.8 232 35.3
vmacro07306 Vaccinium macrocarpon HOM05D003978 ORTHO05D006033 7.1e-21 104.8 219 36.5
Atru.chr12.875 Acer truncatum HOM05D003978 ORTHO05D006033 9.3e-21 104.4 234 34.2
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 9.3e-21 104.4 235 35.3
Cfa001800 Carpinus fangiana HOM05D003978 ORTHO05D006033 1.6e-20 103.6 235 35.7
TWI63G1197 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 2.1e-20 103.2 239 33.5
Oeu007407.1 Olea europaea HOM05D003978 ORTHO05D006033 2.7e-20 102.8 215 34.4
TAR633G1384 Trochodendron aralioides HOM05D003978 ORTHO05D006033 2.7e-20 102.8 234 35.5
Psat6g229760 Pisum sativum HOM05D003978 ORTHO05D006033 3.5e-20 102.4 234 33.3
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 4.6e-20 102.1 242 33.9
Sed0002426 Sechium edule HOM05D003978 ORTHO05D006033 6.0e-20 101.7 242 34.3
VMungo0720G1413 Vigna mungo HOM05D003978 ORTHO05D006033 7.8e-20 101.3 236 33.9
Thecc.10G086400 Theobroma cacao HOM05D003978 ORTHO05D006033 1.0e-19 100.9 228 36.0
BraA09t37367Z Brassica rapa HOM05D003978 ORTHO05D006033 6.6e-19 98.2 51 90.2
Lalb_Chr03g0036261 Lupinus albus HOM05D003978 ORTHO05D006033 6.6e-19 98.2 114 50.9
ECA238G2158 Erigeron canadensis HOM05D003978 ORTHO05D006033 8.7e-19 97.8 240 30.8
THA.LOC104823202 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 1.5e-18 97.1 257 32.7
TAR636G3645 Trochodendron aralioides HOM05D001807 ORTHO05D002044 1.5e-18 97.1 226 35.4
TWI15G0746 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 3.3e-18 95.9 93 54.8
EL10Ac7g16661 Beta vulgaris HOM05D003978 ORTHO05D006033 7.3e-18 94.7 223 33.6
Dinv41792 Davidia involucrata HOM05D003978 ORTHO05D006033 7.3e-18 94.7 93 53.8
Cpa.g.sc53.147 Carica papaya HOM05D003978 ORTHO05D006033 1.3e-17 94.0 93 54.8
SGA_v2.0_scaffold51G18710 Striga asiatica HOM05D003978 ORTHO05D006033 1.3e-17 94.0 225 34.2
Prupe.2G206800 Prunus persica HOM05D003978 ORTHO05D006033 1.6e-17 93.6 236 34.7
Sc10g0008920 Simmondsia chinensis HOM05D003978 ORTHO05D006033 1.6e-17 93.6 233 31.3
Phvul.007G025050 Phaseolus vulgaris HOM05D003978 ORTHO05D006033 2.1e-17 93.2 240 33.3
HanXRQChr14g0456531 Helianthus annuus HOM05D003978 ORTHO05D006033 2.8e-17 92.8 248 33.9
Potri.008G033000 Populus trichocarpa HOM05D003978 ORTHO05D006033 2.8e-17 92.8 82 59.8
Actinidia03846 Actinidia chinensis HOM05D003978 ORTHO05D006033 8.1e-17 91.3 90 53.3
PSO339G1141 Papaver somniferum HOM05D003978 ORTHO05D006033 1.1e-16 90.9 253 34.4
QL07p042820 Quercus lobata HOM05D003978 ORTHO05D006033 1.1e-16 90.9 226 35.8
COL.COLO4_36551 Corchorus olitorius HOM05D003978 ORTHO05D006033 1.4e-16 90.5 233 33.9
MSTRG.8127 Avicennia marina HOM05D003978 ORTHO05D006033 1.8e-16 90.1 242 33.5
PSO801G0725 Papaver somniferum HOM05D003978 ORTHO05D006033 1.8e-16 90.1 250 32.0
MD01G1101500 Malus domestica HOM05D003978 ORTHO05D006033 5.3e-16 88.6 167 38.9
SEGI_04637 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 5.3e-16 88.6 215 33.5
MD07G1168200 Malus domestica HOM05D003978 ORTHO05D006033 1.2e-15 87.4 163 38.0
Oeu033869.1 Olea europaea HOM05D003978 ORTHO05D006033 1.2e-15 87.4 213 33.8
AUR62026923 Chenopodium quinoa HOM05D003978 ORTHO05D006033 1.5e-15 87.0 195 35.4
Sed0027411 Sechium edule HOM05D003978 ORTHO05D006033 1.5e-15 87.0 189 34.4
PGSC0003DMG400031080 Solanum tuberosum HOM05D003978 ORTHO05D006033 1.5e-15 87.0 70 60.0
Cfa017638 Carpinus fangiana HOM05D003978 ORTHO05D006033 2.6e-15 86.3 227 31.7
Solyc11g008210.3 Solanum lycopersicum HOM05D003978 ORTHO05D006033 3.4e-15 85.9 71 57.7
vmacro07118 Vaccinium macrocarpon HOM05D003978 ORTHO05D006033 4.5e-15 85.5 182 34.6
Sopen11g003980 Solanum pennellii HOM05D003978 ORTHO05D006033 5.8e-15 85.1 70 58.6
Aa31LG1G21070 Aethionema arabicum HOM05D003978 ORTHO05D006033 1.7e-14 83.6 255 32.2
CARHR209000 Cardamine hirsuta HOM05D003978 ORTHO05D006033 1.7e-14 83.6 78 56.4
FAN03G0654 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.7e-14 83.6 244 30.3
MBI04_g13679_MAGBIO Magnolia biondii HOM05D003978 ORTHO05D006033 1.7e-14 83.6 252 29.8
AL6G13910 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 2.2e-14 83.2 78 56.4
CSS0048765 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 2.2e-14 83.2 233 33.0
FAN01G2622 Fragaria x ananassa HOM05D003978 ORTHO05D006033 2.2e-14 83.2 246 30.5
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 2.2e-14 83.2 94 50.0
AT5G04280 Arabidopsis thaliana HOM05D003978 ORTHO05D006033 6.4e-14 81.6 77 55.8
A03p01600 Brassica napus HOM05D003978 ORTHO05D006033 6.4e-14 81.6 80 56.2
C03p01930 Brassica napus HOM05D003978 ORTHO05D006033 6.4e-14 81.6 80 56.2
BolC3t12747H Brassica oleracea HOM05D003978 ORTHO05D006033 6.4e-14 81.6 80 56.2
BraA03t09534Z Brassica rapa HOM05D003978 ORTHO05D006033 6.4e-14 81.6 80 56.2
Carub.0006s0323 Capsella rubella HOM05D003978 ORTHO05D006033 6.4e-14 81.6 78 55.1
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 6.4e-14 81.6 229 31.9
Duzib106G0034 Durio zibethinus HOM05D001807 ORTHO05D002044 6.4e-14 81.6 210 34.8
FvH4_7g18520 Fragaria vesca HOM05D003978 ORTHO05D006033 6.4e-14 81.6 246 30.1
FAN06G3745 Fragaria x ananassa HOM05D003978 ORTHO05D006033 6.4e-14 81.6 246 30.1
FAN10G1475 Fragaria x ananassa HOM05D003978 ORTHO05D006033 6.4e-14 81.6 246 30.1
ATR0665G372 Amborella trichopoda HOM05D003978 ORTHO05D006033 1.1e-13 80.9 234 31.2
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 1.1e-13 80.9 96 49.0
Haze_20513 Corylus avellana HOM05D003978 ORTHO05D006033 1.4e-13 80.5 229 29.7
Haze_16751 Corylus avellana HOM05D003978 ORTHO05D006033 1.9e-13 80.1 74 56.8
Sp6g38470 Schrenkiella parvula HOM05D003978 ORTHO05D006033 2.4e-13 79.7 104 45.2
FAN10G2862 Fragaria x ananassa HOM05D003978 ORTHO05D006033 3.2e-13 79.3 247 30.8
RcHm_v2.0_Chr1g0362301 Rosa chinensis HOM05D003978 ORTHO05D006033 3.2e-13 79.3 238 30.7
Ah.08g211530 Amaranthus hybridus HOM05D003978 ORTHO05D006033 5.4e-13 78.6 220 33.2
GSVIVG01033666001 Vitis vinifera HOM05D003978 ORTHO05D000124 5.4e-13 78.6 53 67.9
CANSAT80G2867 Cannabis sativa HOM05D003978 ORTHO05D006033 1.2e-12 77.4 230 34.3
CDE02G4598 Ceratophyllum demersum HOM05D003978 ORTHO05D006033 1.6e-12 77.0 74 50.0
FAN06G5022 Fragaria x ananassa HOM05D003978 ORTHO05D006033 2.1e-12 76.6 239 30.5
Cfa001801 Carpinus fangiana HOM05D003978 ORTHO05D006033 6.0e-12 75.1 70 55.7
AUR62042058 Chenopodium quinoa HOM05D003978 ORTHO05D006033 1.8e-11 73.6 53 64.2
Oeu013853.1 Olea europaea HOM05D003978 ORTHO05D006033 3.0e-11 72.8 249 30.1
Rhsim03G0115000 Rhododendron simsii HOM05D003978 ORTHO05D006033 3.9e-11 72.4 100 47.0
Atru.chr8.1765 Acer truncatum HOM05D003978 ORTHO05D000124 1.5e-10 70.5 76 51.3
Zm00001eb053020 Zea mays HOM05D003978 ORTHO05D006033 5.6e-10 68.6 95 44.2
Aqoxy2G02465 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 2.8e-09 66.2 211 30.8
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 6.2e-09 65.1 93 47.3
ECA238G3060 Erigeron canadensis HOM05D000007 ORTHO05D000039 8.1e-09 64.7 42 69.0
SEGI_12114 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 8.1e-09 64.7 109 40.4
Mapoly0060s0105 Marchantia polymorpha HOM05D000142 ORTHO05D000124 1.1e-08 64.3 50 56.0
Zm00001eb116730 Zea mays HOM05D003978 ORTHO05D006033 2.4e-08 63.2 75 48.0
Zm00001eb217310 Zea mays HOM05D003978 ORTHO05D006033 5.3e-08 62.0 95 42.1
Zm00001eb302210 Zea mays HOM05D003978 ORTHO05D006033 9.0e-08 61.2 48 60.4
CBR_g26188 Chara braunii HOM05D000142 ORTHO05D000124 1.5e-07 60.5 47 57.4
Pp3c17_4050 Physcomitrium patens HOM05D000142 ORTHO05D000124 5.8e-07 58.5 49 51.0
SMO339G0031 Selaginella moellendorffii HOM05D000142 ORTHO05D000124 7.6e-07 58.2 48 50.0
Pp3c12_1830 Physcomitrium patens HOM05D000142 ORTHO05D000124 1.7e-06 57.0 49 49.0
BcaC03g12941 Brassica carinata HOM05D003978 ORTHO05D006033 2.9e-06 56.2 48 56.2
BolC2t06145H Brassica oleracea HOM05D024329 ORTHO05D024034 3.8e-06 55.8 159 32.1
Aqoxy5G02170 Aquilegia oxysepala HOM05D000142 ORTHO05D000124 8.4e-06 54.7 50 48.0
CBR_g42163 Chara braunii HOM05D000142 ORTHO05D000124 8.4e-06 54.7 90 35.6


User provided reference genes

Program Settings