Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p00120 Brassica napus HOM05D000327 ORTHO05D027709 5.6e-110 401.0 206 100.0
BcaC09g51577 Brassica carinata HOM05D000327 ORTHO05D000218 3.4e-83 312.0 193 87.6
BolC1t01153H Brassica oleracea HOM05D000327 ORTHO05D000218 1.7e-82 309.7 193 87.0
A09p47490 Brassica napus HOM05D000327 ORTHO05D000218 1.5e-78 296.6 193 83.4
BraA09t40207Z Brassica rapa HOM05D000327 ORTHO05D000218 1.5e-78 296.6 193 83.4
C09p00740 Brassica napus HOM05D000327 ORTHO05D027709 1.9e-78 296.2 185 86.5
BolC9t53008H Brassica oleracea HOM05D000327 ORTHO05D027709 1.9e-78 296.2 185 86.5
BolC1t01155H Brassica oleracea HOM05D000327 ORTHO05D000218 2.4e-68 262.7 203 76.8
BcaB07g34122 Brassica carinata HOM05D000327 ORTHO05D000218 5.3e-68 261.5 193 75.1
C05p07080 Brassica napus HOM05D000327 ORTHO05D000218 1.4e-65 253.4 198 76.8
BolC5t29463H Brassica oleracea HOM05D000327 ORTHO05D000218 1.4e-65 253.4 198 76.8
BcaC04g24134 Brassica carinata HOM05D000327 ORTHO05D027709 4.1e-60 235.3 155 85.2
BcaC05g24758 Brassica carinata HOM05D000327 ORTHO05D000218 1.4e-57 226.9 198 71.2
Carub.0008s2193 Capsella rubella HOM05D000327 ORTHO05D000218 1.7e-50 203.4 204 60.8
AT2G19610 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 1.5e-49 200.3 192 64.1
AL4G20390 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 1.6e-48 196.8 202 62.9
CARHR108310 Cardamine hirsuta HOM05D000327 ORTHO05D000218 4.4e-46 188.7 202 60.4
BcaC09g51565 Brassica carinata HOM05D000327 ORTHO05D000218 1.2e-38 164.1 125 75.2
AT5G07640 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 9.1e-36 154.5 191 48.2
AL6G19590 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 4.0e-31 139.0 194 44.3
MD11G1125800 Malus domestica HOM05D000327 ORTHO05D000218 3.0e-23 112.8 200 38.0
MD11G1126100 Malus domestica HOM05D000327 ORTHO05D000218 3.0e-23 112.8 200 38.0
FAN11G2781 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.2e-22 110.9 208 38.5
RcHm_v2.0_Chr5g0060881 Rosa chinensis HOM05D000327 ORTHO05D000218 5.8e-22 108.6 208 35.1
THA.LOC104810840 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 2.9e-21 106.3 198 38.9
FvH4_3g33470 Fragaria vesca HOM05D000327 ORTHO05D000218 6.4e-21 105.1 208 38.0
Cfa011368 Carpinus fangiana HOM05D000327 ORTHO05D000218 1.4e-20 104.0 199 39.2
MELO3C005007.2 Cucumis melo HOM05D000327 ORTHO05D000218 1.4e-20 104.0 199 37.2
Prupe.6G094500 Prunus persica HOM05D000327 ORTHO05D000218 1.8e-20 103.6 200 37.0
AL5G24010 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 3.2e-20 102.8 209 37.3
BcaB01g01084 Brassica carinata HOM05D000327 ORTHO05D000218 3.2e-20 102.8 201 38.3
CANSAT54G2823 Cannabis sativa HOM05D000327 ORTHO05D000218 3.2e-20 102.8 213 37.6
Thhalv10002469m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 3.2e-20 102.8 198 37.9
Aa31sc447G30 Aethionema arabicum HOM05D000327 ORTHO05D000218 1.2e-19 100.9 198 37.9
Manes.04G025200 Manihot esculenta HOM05D000327 ORTHO05D000218 1.2e-19 100.9 204 35.3
ClCG03G002380 Citrullus lanatus HOM05D000327 ORTHO05D000218 1.6e-19 100.5 199 35.7
Haze_23926 Corylus avellana HOM05D000327 ORTHO05D000218 1.6e-19 100.5 199 39.2
CsaV3_1G013060 Cucumis sativus L. HOM05D000327 ORTHO05D000218 1.6e-19 100.5 200 36.0
Prupe.6G094200 Prunus persica HOM05D000327 ORTHO05D000218 1.6e-19 100.5 200 35.5
Sp5g15910 Schrenkiella parvula HOM05D000327 ORTHO05D000218 1.6e-19 100.5 198 37.4
BcaC01g01968 Brassica carinata HOM05D000327 ORTHO05D000218 2.7e-19 99.8 198 37.4
C03p69970 Brassica napus HOM05D000327 ORTHO05D000218 2.7e-19 99.8 198 37.4
BolC3t19257H Brassica oleracea HOM05D000327 ORTHO05D000218 2.7e-19 99.8 198 37.4
CiPaw.13G106700 Carya illinoinensis HOM05D000327 ORTHO05D000218 3.5e-19 99.4 198 36.9
FvH4_3g33450 Fragaria vesca HOM05D000327 ORTHO05D000218 6.0e-19 98.6 211 34.6
QL01p037042 Quercus lobata HOM05D000327 ORTHO05D000218 7.8e-19 98.2 197 38.1
A06p21350 Brassica napus HOM05D000327 ORTHO05D000218 3.0e-18 96.3 198 36.9
BraA06t25225Z Brassica rapa HOM05D000327 ORTHO05D000218 3.9e-18 95.9 198 36.9
RcHm_v2.0_Chr5g0060811 Rosa chinensis HOM05D000327 ORTHO05D000218 3.9e-18 95.9 198 33.8
TWI75G1725 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 5.0e-18 95.5 209 37.3
Carub.0005s1128 Capsella rubella HOM05D000327 ORTHO05D000218 6.6e-18 95.1 198 36.4
RcHm_v2.0_Chr5g0060821 Rosa chinensis HOM05D000327 ORTHO05D000218 6.6e-18 95.1 196 36.2
Sed0008032 Sechium edule HOM05D000327 ORTHO05D000218 6.6e-18 95.1 208 34.6
Thecc.09G260500 Theobroma cacao HOM05D000327 ORTHO05D000218 1.5e-17 94.0 196 33.7
Potri.009G150100 Populus trichocarpa HOM05D000327 ORTHO05D000218 5.6e-17 92.0 214 34.1
Sed0010914 Sechium edule HOM05D000327 ORTHO05D000218 5.6e-17 92.0 205 33.7
Lj1A184T43 Lonicera japonica HOM05D000327 ORTHO05D000218 9.5e-17 91.3 196 35.2
RcHm_v2.0_Chr5g0060851 Rosa chinensis HOM05D000327 ORTHO05D000218 2.1e-16 90.1 196 35.7
TWI79G0034 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 2.1e-16 90.1 196 36.2
Haze_23927 Corylus avellana HOM05D000327 ORTHO05D000218 2.8e-16 89.7 192 39.1
Duzib168G0309 Durio zibethinus HOM05D000327 ORTHO05D000218 1.4e-15 87.4 196 31.6
Cpa.g.sc139.63 Carica papaya HOM05D000327 ORTHO05D000218 2.3e-15 86.7 199 34.2
Sabra09G0118800 Salix brachista HOM05D000327 ORTHO05D000218 4.0e-15 85.9 214 32.7
Gohir.A07G116101 Gossypium hirsutum HOM05D000327 ORTHO05D000218 5.2e-15 85.5 197 34.5
Gohir.D07G120500 Gossypium hirsutum HOM05D000327 ORTHO05D000218 6.8e-15 85.1 197 34.5
Gorai.001G129800 Gossypium raimondii HOM05D000327 ORTHO05D000218 6.8e-15 85.1 197 34.5
Gohir.A09G106100 Gossypium hirsutum HOM05D000327 ORTHO05D000218 8.9e-15 84.7 196 33.2
A06p05870 Brassica napus HOM05D000327 ORTHO05D000218 1.5e-14 84.0 57 71.9
BraA06t23796Z Brassica rapa HOM05D000327 ORTHO05D000218 1.5e-14 84.0 57 70.2
Gorai.006G120800 Gossypium raimondii HOM05D000327 ORTHO05D000218 2.6e-14 83.2 196 33.7
Gohir.D09G102800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 7.5e-14 81.6 196 33.2
Lj3g0001518 Lotus japonicus HOM05D000327 ORTHO05D000218 1.3e-13 80.9 198 35.9
Haze_23928 Corylus avellana HOM05D000327 ORTHO05D000218 1.7e-13 80.5 209 33.5
Lj3g0016538 Lotus japonicus HOM05D000327 ORTHO05D000218 2.9e-13 79.7 197 34.0
Hma1.2p1_0958F.1_g241500 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 3.7e-13 79.3 206 31.1
Hma1.2p1_0958F.1_g241550 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 8.3e-13 78.2 204 32.4
CARHR150230 Cardamine hirsuta HOM05D000327 ORTHO05D000218 1.1e-12 77.8 155 39.4
Dinv32794 Davidia involucrata HOM05D000327 ORTHO05D000218 1.1e-12 77.8 201 34.3
Hma1.2p1_2713F.1_g327380 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.1e-12 77.8 204 32.4
Prupe.6G094100 Prunus persica HOM05D000327 ORTHO05D000218 1.1e-12 77.8 210 32.9
TWI31G0941 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 1.1e-12 77.8 197 32.0
Eucgr.J00956 Eucalyptus grandis HOM05D000327 ORTHO05D000218 1.4e-12 77.4 191 36.1
RcHm_v2.0_Chr5g0060891 Rosa chinensis HOM05D000327 ORTHO05D000218 1.4e-12 77.4 209 32.1
MD11G1125700 Malus domestica HOM05D000327 ORTHO05D000218 1.9e-12 77.0 198 33.8
Dinv06223 Davidia involucrata HOM05D000327 ORTHO05D000218 2.4e-12 76.6 198 33.3
Dinv06970 Davidia involucrata HOM05D000327 ORTHO05D000218 2.4e-12 76.6 202 33.7
COL.COLO4_25250 Corchorus olitorius HOM05D000327 ORTHO05D000218 4.1e-12 75.9 198 33.8
MD11G1125600 Malus domestica HOM05D000327 ORTHO05D000218 4.1e-12 75.9 198 33.3
Lalb_Chr01g0004151 Lupinus albus HOM05D000327 ORTHO05D000218 7.0e-12 75.1 197 31.0
Haze_23930 Corylus avellana HOM05D000327 ORTHO05D000218 1.6e-11 73.9 195 31.3
MELO3C025743.2 Cucumis melo HOM05D000327 ORTHO05D000218 1.6e-11 73.9 200 31.0
Dinv32796 Davidia involucrata HOM05D000327 ORTHO05D000218 2.0e-11 73.6 196 32.7
ECA233G0642 Erigeron canadensis HOM05D000327 ORTHO05D000218 2.0e-11 73.6 208 31.2
FAN16G3310 Fragaria x ananassa HOM05D000327 ORTHO05D000218 2.0e-11 73.6 209 31.1
PGR119G0050 Punica granatum HOM05D000327 ORTHO05D000218 3.5e-11 72.8 205 30.7
Sc15g0001670 Simmondsia chinensis HOM05D000327 ORTHO05D000218 3.5e-11 72.8 211 32.2
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 4.6e-11 72.4 198 33.8
AL8G10160 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 4.6e-11 72.4 198 33.8
Sp6g21870 Schrenkiella parvula HOM05D000327 ORTHO05D000218 4.6e-11 72.4 203 32.0
Duzib150G1357 Durio zibethinus HOM05D000327 ORTHO05D000218 6.0e-11 72.0 198 31.8
Manes.11G140900 Manihot esculenta HOM05D000327 ORTHO05D000218 6.0e-11 72.0 196 32.7
CSS0010185 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 7.8e-11 71.6 213 31.0
CSS0041180 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.0e-10 71.2 206 31.1
Cfa011370 Carpinus fangiana HOM05D000327 ORTHO05D000218 1.0e-10 71.2 195 29.7
FvH4_3g33480 Fragaria vesca HOM05D000327 ORTHO05D000218 1.0e-10 71.2 197 31.0
Hma1.2p1_0958F.1_g241510 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.0e-10 71.2 200 31.5
THA.LOC104810839 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 1.0e-10 71.2 200 32.5
Thhalv10000449m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 1.3e-10 70.9 198 28.8
FvH4_3g33471 Fragaria vesca HOM05D000327 ORTHO05D000218 1.3e-10 70.9 141 34.8
AT5G60250 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 2.3e-10 70.1 198 32.8
arahy.Tifrunner.gnm1.ann1.PRB4HP Arachis hypogaea HOM05D000327 ORTHO05D000218 2.3e-10 70.1 199 33.7
DCAR_006040 Daucus carota HOM05D000327 ORTHO05D000218 2.3e-10 70.1 235 30.2
ClCG02G020920 Citrullus lanatus HOM05D000327 ORTHO05D000218 3.0e-10 69.7 199 31.2
VMungo1127G0662 Vigna mungo HOM05D000327 ORTHO05D000218 3.0e-10 69.7 212 31.1
arahy.Tifrunner.gnm1.ann1.ARC7JY Arachis hypogaea HOM05D000327 ORTHO05D000218 5.0e-10 68.9 199 33.2
arahy.Tifrunner.gnm1.ann1.LWB7Z6 Arachis hypogaea HOM05D000327 ORTHO05D000218 5.0e-10 68.9 199 33.2
Thecc.09G260600 Theobroma cacao HOM05D000327 ORTHO05D000218 5.0e-10 68.9 197 32.5
vmacro14469 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 5.0e-10 68.9 210 31.4
MSTRG.17860 Avicennia marina HOM05D000327 ORTHO05D000218 8.6e-10 68.2 178 32.6
FAN11G1829 Fragaria x ananassa HOM05D000327 ORTHO05D000218 8.6e-10 68.2 225 29.3
TPR.G14922 Trifolium pratense HOM05D000327 ORTHO05D000218 8.6e-10 68.2 207 31.4
PSO063G6856 Papaver somniferum HOM05D000327 ORTHO05D000218 1.1e-09 67.8 197 31.5
Glyma.12G071900 Glycine max HOM05D000327 ORTHO05D000218 1.5e-09 67.4 211 30.3
PGR102G1122 Punica granatum HOM05D000327 ORTHO05D000218 1.5e-09 67.4 203 29.6
CsaV3_6G021590 Cucumis sativus L. HOM05D000327 ORTHO05D000218 5.6e-09 65.5 196 30.1
PSO170G6011 Papaver somniferum HOM05D000327 ORTHO05D000218 5.6e-09 65.5 197 31.0
TAR633G1515 Trochodendron aralioides HOM05D000327 ORTHO05D000218 5.6e-09 65.5 209 30.1
Carub.0008s2098 Capsella rubella HOM05D000327 ORTHO05D000218 7.3e-09 65.1 201 31.8
COL.COLO4_25249 Corchorus olitorius HOM05D000327 ORTHO05D000218 9.5e-09 64.7 200 30.0
PSO170G3308 Papaver somniferum HOM05D000327 ORTHO05D000218 1.2e-08 64.3 197 31.0
CARHR273920 Cardamine hirsuta HOM05D000327 ORTHO05D000218 1.6e-08 63.9 198 30.3
Potri.006G104700 Populus trichocarpa HOM05D000327 ORTHO05D000218 1.6e-08 63.9 201 29.9
Nitab4.5_0000022g0110 Nicotiana tabacum HOM05D000327 ORTHO05D000218 2.8e-08 63.2 207 30.9
Glyma.11G152542 Glycine max HOM05D000327 ORTHO05D000218 3.6e-08 62.8 196 30.1
Actinidia07112 Actinidia chinensis HOM05D000327 ORTHO05D000218 4.7e-08 62.4 209 30.6
BcaB06g29607 Brassica carinata HOM05D000327 ORTHO05D000218 6.2e-08 62.0 194 27.3
CSS0019255 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 6.2e-08 62.0 225 29.8
Rhsim13G0092100 Rhododendron simsii HOM05D000327 ORTHO05D000218 6.2e-08 62.0 198 30.8
ECA233G3883 Erigeron canadensis HOM05D000327 ORTHO05D000218 8.1e-08 61.6 192 30.2
PSO170G1485 Papaver somniferum HOM05D000327 ORTHO05D000218 8.1e-08 61.6 213 30.5
PGSC0003DMG400023271 Solanum tuberosum HOM05D000327 ORTHO05D000218 8.1e-08 61.6 199 28.6
Lsat_1_v5_gn_6_26361 Lactuca sativa HOM05D000327 ORTHO05D000218 1.1e-07 61.2 204 28.4
PSO782G0942 Papaver somniferum HOM05D000327 ORTHO05D000218 1.1e-07 61.2 197 29.4
Atru.chr3.3695 Acer truncatum HOM05D000327 ORTHO05D000218 1.4e-07 60.8 138 33.3
Dinv32795 Davidia involucrata HOM05D000327 ORTHO05D000218 1.8e-07 60.5 97 40.2
Solyc06g005000.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 1.8e-07 60.5 200 29.0
AL8G36850 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.3e-07 60.1 151 33.1
Nitab4.5_0000022g0140 Nicotiana tabacum HOM05D000327 ORTHO05D000218 3.1e-07 59.7 205 29.3
Nitab4.5_0005377g0010 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.0e-07 59.3 141 34.0
CAN.G553.15 Capsicum annuum HOM05D000327 ORTHO05D000218 6.8e-07 58.5 205 29.3
CSS0021686 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 8.9e-07 58.2 198 28.3
PGSC0003DMG400023248 Solanum tuberosum HOM05D000327 ORTHO05D000218 8.9e-07 58.2 200 28.0
CiPaw.13G106600 Carya illinoinensis HOM05D000327 ORTHO05D000218 1.2e-06 57.8 191 25.7
Haze_23921 Corylus avellana HOM05D000327 ORTHO05D000218 1.2e-06 57.8 95 40.0
Nitab4.5_0007510g0020 Nicotiana tabacum HOM05D000327 ORTHO05D000218 2.0e-06 57.0 210 28.6
Haze_23922 Corylus avellana HOM05D000327 ORTHO05D000218 2.6e-06 56.6 95 41.1
EL10Ac9g22443 Beta vulgaris HOM05D000327 ORTHO05D000218 3.4e-06 56.2 205 28.8
FAN25G1121 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.4e-06 56.2 199 30.7
GSVIVG01025129001 Vitis vinifera HOM05D000327 ORTHO05D000218 3.4e-06 56.2 247 28.3
Aqoxy4G03200 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 4.4e-06 55.8 201 26.9
Eucgr.B02466 Eucalyptus grandis HOM05D000327 ORTHO05D000218 4.4e-06 55.8 198 27.3
Peaxi162Scf00389g00082 Petunia axillaris HOM05D000327 ORTHO05D000218 5.8e-06 55.5 176 30.1
Sopen06g001010 Solanum pennellii HOM05D000327 ORTHO05D000218 9.9e-06 54.7 187 31.6


User provided reference genes

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