Gene: Sopen06g001010

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g001010
  • Transcript Identifier Sopen06g001010.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 2276-6373 : positive

Gene Family Information

  • ID HOM05D000327
  • #Genes/#Species 1418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g001010.1

Descriptions

  • Description zinc finger (C3HC4-type RING finger) family protein | FUNCTIONS IN: zinc ion binding, nucleic acid binding | EXPRESSED IN: 14 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, C6HC-type , Zinc finger, RING-type , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002867 IBR domain
IPR036397 Ribonuclease H superfamily
IPR031127 E3 ubiquitin ligase RBR family
IPR002156 Ribonuclease H domain
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
19.2.2.1.4.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)