Gene: Thhalv10000449m.g

General Information

Structural Information

  • Species Eutrema salsugineum
  • Gene Identifier Thhalv10000449m.g
  • Transcript Identifier Thhalv10000449m
  • Gene Type Coding gene
  • Location scaffold_15 : 7053195-7055546 : negative

Gene Family Information

  • ID HOM05D000327
  • #Genes/#Species 1418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thhalv10000449m.g.v1.0
  • pacid 20208576

Descriptions

  • Description PF01485//PF13456 - IBR domain, a half RING-finger domain (IBR) // Reverse transcriptase-like (RVT_3)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0061630
ISO
PLAZA Integrative Orthologyubiquitin protein ligase activity AT2G21420
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G21420

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G21420

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002156 Ribonuclease H domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR031127 E3 ubiquitin ligase RBR family
IPR002867 IBR domain
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
19.2.2.1.4.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)