Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 8.2e-135 483.8 257 100.0
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 2.4e-134 482.3 257 99.2
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 2.2e-132 475.7 257 97.7
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 2.2e-132 475.7 257 97.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 6.5e-124 447.6 252 93.7
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.5e-123 445.7 251 93.6
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 6.1e-122 441.0 252 92.9
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 4.0e-121 438.3 251 92.4
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 1.3e-119 433.3 251 91.6
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.7e-119 433.0 263 87.8
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 4.8e-119 431.4 263 87.8
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.3e-116 423.3 251 89.2
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 5.0e-116 421.4 251 88.0
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-114 416.0 259 86.5
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.1e-114 416.0 259 86.5
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 3.6e-114 415.2 259 85.3
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.0e-113 413.7 259 85.7
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.0e-113 413.7 259 85.7
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 8.8e-113 410.6 251 87.3
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.5e-107 392.5 252 82.1
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 5.5e-107 391.3 259 82.2
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 7.7e-101 370.9 260 74.6
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.8e-100 368.6 247 78.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 6.6e-100 367.9 247 78.9
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.1e-99 367.1 256 77.3
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.9e-99 366.3 243 80.2
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.6e-99 364.8 257 75.9
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 7.3e-99 364.4 247 78.1
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.5e-99 364.0 257 75.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.5e-99 364.0 257 75.9
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 4.7e-98 361.7 249 76.3
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.3e-97 359.4 249 77.1
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 4.0e-97 358.6 240 79.6
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 3.4e-96 355.5 249 76.3
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.4e-96 355.1 259 73.7
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.3e-95 353.6 247 75.7
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 1.7e-95 353.2 243 77.4
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 2.9e-95 352.4 255 72.5
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 4.9e-95 351.7 241 78.0
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 4.9e-95 351.7 243 77.0
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 6.4e-95 351.3 249 74.3
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 8.3e-95 350.9 243 77.0
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.1e-94 350.5 237 77.6
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 2.4e-94 349.4 239 77.8
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 3.2e-94 349.0 244 76.2
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 5.4e-94 348.2 250 74.4
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 7.0e-94 347.8 239 78.2
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.6e-93 346.7 240 76.2
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 2.0e-93 346.3 240 76.2
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 2.7e-93 345.9 250 74.0
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.5e-93 345.5 248 75.4
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 3.5e-93 345.5 235 77.9
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 3.5e-93 345.5 260 72.7
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 4.6e-93 345.1 257 73.9
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 5.9e-93 344.7 240 76.2
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.0e-92 344.0 248 75.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 1.3e-92 343.6 239 76.6
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.7e-92 343.2 248 75.0
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.9e-91 339.7 239 74.5
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 2.5e-91 339.3 239 75.7
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 3.3e-91 339.0 243 75.7
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 4.3e-91 338.6 239 76.2
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 5.6e-91 338.2 236 75.8
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 1.2e-90 337.0 268 69.4
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.2e-90 337.0 250 72.8
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 3.6e-90 335.5 254 71.7
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.6e-90 335.5 258 72.1
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.0e-89 334.0 266 69.2
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.8e-89 333.2 239 75.3
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.3e-89 332.8 239 74.9
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 6.8e-89 331.3 243 73.3
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 8.9e-89 330.9 243 74.9
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.2e-88 330.5 247 74.1
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.2e-88 330.5 243 73.7
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 2.0e-88 329.7 250 70.8
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.4e-88 328.6 249 71.5
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 4.4e-88 328.6 243 74.1
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 4.4e-88 328.6 238 73.9
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 4.4e-88 328.6 250 72.0
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 5.8e-88 328.2 243 72.4
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 7.5e-88 327.8 256 69.5
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 7.5e-88 327.8 256 67.6
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 1.3e-87 327.0 243 72.0
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 2.9e-87 325.9 243 71.6
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 2.9e-87 325.9 239 72.0
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 4.9e-87 325.1 249 69.9
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 8.3e-87 324.3 243 72.8
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.1e-86 323.9 252 69.0
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 5.4e-86 321.6 243 71.2
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 7.0e-86 321.2 242 73.6
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.2e-85 320.5 239 72.8
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 6.0e-85 318.2 243 70.0
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.3e-84 317.0 260 67.7
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.3e-84 317.0 255 67.5
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.1e-83 313.9 251 69.7
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.5e-83 313.5 273 65.2
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.9e-83 313.2 256 67.6
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 9.5e-83 310.8 239 69.0
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.2e-82 310.5 241 68.9
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.2e-82 310.5 239 69.0
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.6e-82 310.1 241 68.0
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 8.1e-82 307.8 249 69.5
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 4.0e-81 305.4 235 70.6
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.0e-73 278.9 210 73.3
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.0e-73 278.9 216 72.2
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 6.8e-73 278.1 216 69.9
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.0e-69 265.0 245 61.6
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 6.0e-69 265.0 242 60.3
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 6.6e-68 261.5 153 86.3
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.9e-67 260.0 258 59.7
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.4e-65 253.1 202 68.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.5e-64 250.4 153 82.4
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 7.6e-64 248.1 277 55.6
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.2e-62 242.3 247 56.3
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.1e-61 240.0 257 54.9
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.8e-58 229.6 239 56.5
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.9e-56 221.1 154 74.7
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 6.4e-55 218.4 279 48.4
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 7.1e-54 214.9 197 58.4
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 4.6e-53 212.2 125 86.4
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 4.6e-53 212.2 177 69.5
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.0e-49 199.1 153 70.6
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.2e-45 187.6 153 61.4
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.7e-45 186.4 154 67.5
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 7.4e-43 178.3 154 65.6
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.8e-42 176.4 154 64.3
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 9.0e-41 171.4 166 62.0
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.3e-39 167.5 153 64.1
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 1.7e-39 167.2 233 43.8
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.3e-34 148.7 105 71.4
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.9e-28 129.4 67 91.0
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 7.2e-22 108.6 73 69.9
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 1.1e-19 101.3 239 34.3
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 2.2e-18 97.1 97 57.7
BcaC07g41861 Brassica carinata HOM05D005498 ORTHO05D006719 1.2e-16 91.3 50 90.0
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 7.2e-14 82.0 106 51.9
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 7.2e-14 82.0 100 54.0
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.6e-11 73.6 42 78.6
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 6.3e-10 68.9 106 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-08 64.7 173 32.9
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.5e-06 57.8 99 43.4
SMO144G0154 Selaginella moellendorffii HOM05D006571 ORTHO05D007771 7.2e-06 55.5 117 33.3


User provided reference genes

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