Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 4.6e-246 854.4 513 100.0
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 3.9e-245 851.3 511 100.0
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 3.9e-245 851.3 511 100.0
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.5e-244 849.4 513 99.2
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.1e-242 843.2 513 94.2
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.2e-238 829.7 513 92.8
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 3.3e-236 821.6 520 96.7
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 2.5e-231 805.4 513 89.3
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 6.1e-230 800.8 513 91.6
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 4.8e-227 791.2 513 90.6
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.1e-220 770.0 511 86.3
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.0e-220 769.2 513 89.5
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.0e-220 769.2 500 89.4
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 7.4e-220 767.3 511 85.7
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.2e-219 765.8 511 84.9
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 4.8e-219 764.6 511 85.3
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 8.2e-219 763.8 511 84.7
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 4.1e-218 761.5 513 86.7
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 9.1e-218 760.4 513 88.3
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.2e-217 760.0 511 87.5
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.2e-217 760.0 511 84.9
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.6e-217 758.8 511 87.1
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 4.5e-217 758.1 513 89.7
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.3e-216 756.5 509 84.3
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 5.0e-216 754.6 511 85.1
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.4e-215 753.1 511 87.3
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.4e-215 753.1 511 86.7
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.2e-214 750.0 513 87.3
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.7e-214 748.8 511 83.4
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.8e-213 746.1 511 86.1
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 2.3e-213 745.7 511 86.7
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.0e-213 745.3 511 86.3
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 6.7e-213 744.2 511 85.5
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 8.8e-213 743.8 511 86.5
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 8.8e-213 743.8 511 86.3
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.1e-212 743.4 511 85.9
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 1.5e-212 743.0 511 85.7
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 9.7e-212 740.3 511 83.6
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 9.7e-212 740.3 513 85.6
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 2.2e-211 739.2 511 85.3
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 3.7e-211 738.4 513 84.4
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.3e-211 737.6 511 85.7
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 8.2e-211 737.3 513 84.4
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.1e-210 736.9 511 85.5
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.1e-210 736.9 511 85.1
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.8e-210 736.1 511 84.3
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.8e-210 736.1 510 82.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.8e-210 736.1 511 85.1
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 3.1e-210 735.3 511 85.7
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 3.1e-210 735.3 511 85.5
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.1e-210 734.9 511 84.9
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 5.3e-210 734.6 511 85.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 5.3e-210 734.6 511 85.3
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 7.0e-210 734.2 511 83.4
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 7.0e-210 734.2 533 76.0
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 7.0e-210 734.2 511 84.1
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.2e-209 733.4 511 86.3
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.2e-209 733.4 504 85.9
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.5e-209 733.0 511 82.6
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.5e-209 733.0 511 82.6
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.0e-209 732.6 511 84.9
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.0e-209 732.6 511 85.7
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 2.6e-209 732.3 512 85.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 4.5e-209 731.5 513 86.9
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 5.9e-209 731.1 510 84.9
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 7.7e-209 730.7 511 84.9
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 7.7e-209 730.7 511 85.7
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 2.9e-208 728.8 512 84.8
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 5.0e-208 728.0 512 83.2
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 6.5e-208 727.6 511 84.5
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 8.5e-208 727.2 511 85.5
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.1e-207 726.9 512 83.0
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 9.4e-207 723.8 512 83.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.8e-205 719.5 539 78.5
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.9e-205 718.4 511 84.1
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 6.7e-205 717.6 512 84.0
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 6.7e-205 717.6 511 84.7
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 6.7e-205 717.6 511 84.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.5e-204 716.5 511 84.1
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.5e-204 716.5 504 85.1
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 2.0e-204 716.1 511 84.0
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.4e-204 714.9 504 84.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.4e-204 714.1 536 76.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.3e-203 713.4 511 82.4
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 3.7e-203 711.8 511 81.6
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.8e-202 709.5 511 81.2
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 4.1e-202 708.4 504 81.0
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.0e-200 703.7 511 83.2
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 2.2e-200 702.6 507 82.1
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 5.0e-200 701.4 517 80.5
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 9.8e-196 687.2 511 80.0
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.4e-194 682.6 511 72.4
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.6e-193 679.9 511 74.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.5e-191 672.5 485 82.9
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.6e-190 668.7 511 78.5
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.7e-190 668.3 507 80.9
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.4e-189 666.8 511 76.1
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.8e-189 666.4 549 69.8
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 8.8e-189 664.1 532 75.2
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 4.4e-188 661.8 513 82.7
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.7e-187 659.8 511 77.7
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 8.3e-187 657.5 554 72.4
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.3e-184 650.2 484 82.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 2.5e-183 646.0 513 69.0
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 2.5e-183 646.0 465 85.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.6e-182 642.1 461 86.3
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 3.0e-181 639.0 523 75.0
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 6.4e-171 604.7 511 75.9
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 6.6e-168 594.7 428 84.1
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 3.3e-167 592.4 435 79.8
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 3.1e-165 585.9 430 84.7
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 9.6e-151 537.7 512 65.2
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.1e-142 510.0 403 78.9
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.1e-135 487.6 266 90.2
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 8.7e-128 461.5 251 90.4
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.3e-118 428.7 322 81.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 7.2e-114 415.2 304 77.6
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 9.7e-111 404.8 382 59.9
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.8e-101 374.0 207 90.3
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 4.1e-101 372.9 207 89.9
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 5.0e-83 312.8 365 67.7
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 2.3e-72 277.3 528 39.6
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.7e-70 271.2 257 73.5
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.4e-69 268.1 519 45.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 2.8e-65 253.8 185 79.5
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.3e-59 234.2 130 90.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 3.0e-43 180.6 254 40.6
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.3e-42 177.2 99 81.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.7e-38 164.9 125 64.8
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.1e-37 162.2 80 93.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 2.3e-35 154.5 137 67.9
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.7e-33 146.7 295 33.9
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 9.9e-31 139.0 107 67.3
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 9.9e-31 139.0 77 88.3
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.2e-30 137.9 179 47.5
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 4.9e-30 136.7 70 95.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-28 131.3 69 95.7
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.7e-27 128.3 64 96.9
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 1.7e-27 128.3 64 96.9
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 5.3e-24 116.7 56 92.9
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.5e-18 97.8 56 75.0
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.3e-18 97.4 50 88.0
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 2.4e-16 91.3 100 48.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 2.4e-16 91.3 100 48.0
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.0e-16 90.5 47 93.6
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 8.4e-14 82.8 44 79.5
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.6e-12 78.6 44 75.0
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 3.0e-11 74.3 105 41.9
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 5.1e-11 73.6 134 70.9
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.1e-10 72.4 36 86.1
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.1e-08 65.9 35 88.6
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.3e-08 63.5 33 78.8
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 1.0e-06 59.3 60 58.3


User provided reference genes

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