Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 6.3e-130 467.6 268 100.0
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 3.6e-125 451.8 268 89.9
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 3.4e-123 445.3 266 89.5
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 2.2e-122 442.6 268 90.7
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 1.9e-118 429.5 268 88.1
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 7.8e-112 407.5 277 82.7
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 5.4e-89 331.6 204 88.2
A06p30410 Brassica napus HOM05D003093 ORTHO05D015210 1.0e-71 274.2 144 97.2
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 6.0e-64 248.4 191 76.4
A03p18440 Brassica napus HOM05D015532 ORTHO05D016079 7.7e-51 204.9 125 88.8
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 2.1e-40 170.2 137 71.5
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 6.1e-40 168.7 137 70.8
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 8.0e-40 168.3 137 70.8
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 8.0e-40 168.3 137 70.8
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 8.0e-40 168.3 137 70.8
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 3.9e-39 166.0 176 58.0
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 6.7e-39 165.2 137 69.3
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 1.1e-36 157.9 137 65.7
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.4e-36 157.5 137 65.7
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.4e-36 157.5 137 65.7
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 1.4e-36 157.5 137 67.2
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 2.4e-36 156.8 137 67.2
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 1.6e-35 154.1 137 65.7
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 7.7e-35 151.8 137 64.2
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 2.9e-34 149.8 137 62.8
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 3.8e-34 149.4 137 65.0
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 6.5e-34 148.7 137 64.2
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 7.2e-33 145.2 137 62.0
A06p30420 Brassica napus HOM05D003093 ORTHO05D015210 8.0e-32 141.7 126 69.0
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.2e-29 133.7 138 56.5
A03p18450 Brassica napus HOM05D003093 ORTHO05D015210 7.0e-28 128.6 126 63.5
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 7.0e-28 128.6 140 54.3
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 9.1e-28 128.3 137 53.3
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 1.6e-27 127.5 137 53.3
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 1.7e-26 124.0 157 50.3
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 1.7e-26 124.0 157 50.3
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 2.9e-26 123.2 136 52.9
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 5.0e-26 122.5 140 52.1
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 8.5e-26 121.7 138 51.4
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.5e-25 120.9 161 46.6
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.6e-24 117.5 155 49.0
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.1e-24 117.1 157 48.4
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 2.1e-24 117.1 140 50.0
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 3.6e-24 116.3 106 61.3
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 3.6e-24 116.3 161 47.2
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 4.7e-24 115.9 157 48.4
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 4.7e-24 115.9 140 52.1
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 8.0e-24 115.2 157 45.9
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 8.0e-24 115.2 140 50.7
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 1.0e-23 114.8 161 46.0
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.0e-23 114.8 137 51.8
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.4e-23 114.4 161 46.6
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.8e-23 114.0 140 51.4
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 2.3e-23 113.6 157 48.4
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 4.0e-23 112.8 157 47.1
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 5.2e-23 112.5 138 52.2
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 5.2e-23 112.5 140 47.9
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 6.8e-23 112.1 140 49.3
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 6.8e-23 112.1 157 45.9
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 8.8e-23 111.7 140 50.7
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 8.8e-23 111.7 137 49.6
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 8.8e-23 111.7 161 44.7
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.5e-22 110.9 157 46.5
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 1.5e-22 110.9 158 47.5
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.5e-22 110.9 140 50.7
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.5e-22 110.9 140 49.3
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 3.4e-22 109.8 158 48.1
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 3.4e-22 109.8 140 49.3
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 4.4e-22 109.4 137 48.9
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 5.7e-22 109.0 137 48.9
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 5.7e-22 109.0 137 48.9
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 5.7e-22 109.0 157 45.2
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 7.5e-22 108.6 140 47.9
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 7.5e-22 108.6 140 48.6
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 7.5e-22 108.6 137 50.4
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 7.5e-22 108.6 157 45.9
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 9.8e-22 108.2 140 47.9
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 9.8e-22 108.2 137 48.9
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 9.8e-22 108.2 140 50.0
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 9.8e-22 108.2 137 48.9
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.3e-21 107.8 140 49.3
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 1.3e-21 107.8 137 50.4
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-21 107.8 162 45.1
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.7e-21 107.5 136 50.7
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.7e-21 107.5 140 48.6
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.7e-21 107.5 140 50.0
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.7e-21 107.5 157 45.2
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.7e-21 107.5 137 48.2
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.2e-21 107.1 157 45.9
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.2e-21 107.1 157 45.9
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 2.2e-21 107.1 137 48.9
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 2.2e-21 107.1 140 50.7
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 2.8e-21 106.7 137 48.2
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.8e-21 106.7 137 48.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.8e-21 106.7 137 48.2
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.8e-21 106.7 157 45.9
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.8e-21 106.7 157 45.9
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.8e-21 106.7 157 45.9
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 2.8e-21 106.7 157 47.1
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.8e-21 106.7 137 48.2
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 2.8e-21 106.7 137 48.2
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 3.7e-21 106.3 140 47.1
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 3.7e-21 106.3 140 49.3
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 4.8e-21 105.9 140 47.9
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 4.8e-21 105.9 157 45.9
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.3e-21 105.5 137 47.4
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 6.3e-21 105.5 137 47.4
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 6.3e-21 105.5 140 47.9
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 8.3e-21 105.1 140 48.6
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 8.3e-21 105.1 137 48.9
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 8.3e-21 105.1 157 44.6
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 8.3e-21 105.1 137 50.4
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 1.1e-20 104.8 137 46.7
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 1.1e-20 104.8 137 48.2
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.4e-20 104.4 137 48.2
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.8e-20 104.0 140 46.4
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.8e-20 104.0 137 48.2
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 2.4e-20 103.6 157 45.2
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.4e-20 103.6 141 48.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 2.4e-20 103.6 138 47.1
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 3.1e-20 103.2 140 47.1
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.1e-20 103.2 138 49.3
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 3.1e-20 103.2 143 46.2
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 3.1e-20 103.2 140 47.1
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 4.1e-20 102.8 140 47.9
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 5.4e-20 102.4 137 48.2
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 7.0e-20 102.1 137 47.4
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 7.0e-20 102.1 141 48.9
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 7.0e-20 102.1 157 43.3
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 9.1e-20 101.7 140 49.3
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.2e-19 101.3 137 46.0
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.2e-19 101.3 137 48.2
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 1.6e-19 100.9 136 48.5
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 1.6e-19 100.9 157 46.5
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.0e-19 100.5 136 47.8
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 2.7e-19 100.1 140 46.4
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 2.7e-19 100.1 141 46.8
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 2.3e-18 97.1 154 43.5
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.3e-18 97.1 137 46.7
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 2.9e-18 96.7 135 46.7
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 5.0e-18 95.9 137 46.7
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 8.6e-18 95.1 140 45.7
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 8.6e-18 95.1 114 52.6
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 8.6e-18 95.1 137 46.7
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 8.6e-18 95.1 137 46.7
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.5e-17 94.4 120 50.8
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 1.5e-17 94.4 140 46.4
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.5e-17 93.6 137 46.0
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 4.2e-17 92.8 136 47.1
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.0e-15 88.2 158 39.2
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.0e-15 88.2 158 39.2
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 1.4e-15 87.8 85 54.1
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 2.3e-15 87.0 140 42.9
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 6.8e-15 85.5 158 38.6
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 6.8e-15 85.5 140 42.1
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 2.0e-14 84.0 141 41.1
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 2.6e-14 83.6 140 42.1
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 7.5e-14 82.0 108 50.0
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 9.8e-14 81.6 141 39.7
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 9.8e-14 81.6 141 39.7
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 9.8e-14 81.6 141 39.7
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 2.4e-12 77.0 114 47.4
BolC8t49598H Brassica oleracea HOM05D015532 ORTHO05D016079 1.6e-11 74.3 43 86.0
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 2.0e-11 73.9 114 43.0
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 4.5e-11 72.8 139 40.3
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 5.9e-11 72.4 100 47.0
C01p27010 Brassica napus HOM05D015532 ORTHO05D016079 7.8e-11 72.0 43 83.7
BolC1t02649H Brassica oleracea HOM05D015532 ORTHO05D016079 2.9e-10 70.1 38 89.5
Atru.chr12.589 Acer truncatum HOM05D003093 ORTHO05D015210 5.0e-10 69.3 61 59.0
A03p66140 Brassica napus HOM05D015532 ORTHO05D016079 5.0e-10 69.3 53 69.8
BraA03t15666Z Brassica rapa HOM05D015532 ORTHO05D016079 5.0e-10 69.3 53 69.8
BraA09t36838Z Brassica rapa HOM05D015532 ORTHO05D016079 5.0e-10 69.3 53 69.8
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 3.6e-08 63.2 64 50.0
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.0e-07 61.6 148 33.8
BcaC09g50283 Brassica carinata HOM05D015532 ORTHO05D016079 6.8e-07 58.9 31 90.3
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.6e-06 57.0 52 65.4
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 3.4e-06 56.6 33 84.8
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.4e-06 56.2 40 75.0
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.4e-06 56.2 40 75.0
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 7.5e-06 55.5 40 75.0
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 9.8e-06 55.1 53 64.2


User provided reference genes

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