Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SL05G054550
(Solanum lycopersicum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum lycopersicum | Orthologous gene family | SL05G054550 | 1 |  |
| Anchor point | SL04G011430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | SL05G054550 | 1 | ||
| Tree-based ortholog | SL04G011430 SL05G054550 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Anchor point | 1-to-many | AT3G55380 AT3G46460 AT5G59300 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G59300 | 1 | ||
| Tree-based ortholog | many-to-many | AT5G59300 AT3G46460 | 2 | ||
| Brachypodium distachyon | Anchor point | 1-to-1 | BD2G54550 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BD2G23240 | 1 | ||
| Tree-based ortholog | many-to-many | BD2G23240 BD2G54550 | 2 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00001G03780 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00001G03780 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00190G00050 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR12G15820 | 1 | |
| Tree-based ortholog | many-to-1 | CR12G15820 | 1 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HV41718G00010 | 1 | |
| Tree-based ortholog | many-to-1 | HV41718G00010 | 1 | ||
| Musa acuminata | Anchor point | 1-to-1 | MA06G35090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MA06G35090 | 1 | ||
| Tree-based ortholog | many-to-1 | MA06G35090 | 1 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-many | OSINDICA_01G58930 OSINDICA_05G34390 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OSINDICA_05G34390 | 1 | ||
| Tree-based ortholog | many-to-1 | OSINDICA_05G34390 | 1 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-many | OS01G62244 OS05G38550 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G62244 | 1 | ||
| Tree-based ortholog | many-to-many | OS05G38550 OS01G62244 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL04G04590 | 1 | |
| Tree-based ortholog | many-to-1 | OL04G04590 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00171G00240 PP00171G00660 PP00007G02410 | 3 | |
| Tree-based ortholog | many-to-many | PP00171G00660 PP00171G00240 PP00007G02410 ... | 4 | ||
| Populus trichocarpa | Anchor point | 1-to-many | PT08G05380 PT10G20680 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT08G05390 PT10G20680 | 2 | ||
| Tree-based ortholog | many-to-many | PT08G05390 PT10G20680 | 2 | ||
| Setaria italica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SI005G38400 | 1 | |
| Tree-based ortholog | many-to-many | SI003G21980 SI005G38400 | 2 | ||
| Sorghum bicolor | Anchor point | 1-to-1 | SB03G039320 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SB03G039320 | 1 | ||
| Tree-based ortholog | many-to-1 | SB03G039320 | 1 | ||
| Vitis vinifera | Anchor point | 1-to-many | VV13G05470 VV06G03860 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV13G05470 | 1 | ||
| Tree-based ortholog | many-to-1 | VV13G05470 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G27440 | 1 | |
| Tree-based ortholog | many-to-many | ZM06G25790 ZM08G32140 ZM03G27440 | 3 |