PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.3
Description: transport.amino acids

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A06	17	CH_bra_283	3	3	0.000800993
Brassica rapa	A09	17	CH_bra_282	3	3	0.000800993
Capsella rubella	scaffold_6	17	CH_cru_292	3	3	0.000499444
Citrus sinensis	scaffold00023	17	CH_csi_222	3	3	0.000598463
Eucalyptus grandis	scaffold_10	17	CH_egr_306	6	7	0.000000000618743
Eucalyptus grandis	scaffold_3	17	CH_egr_216	8	12	0.000000000000558955
Eucalyptus grandis	scaffold_3	17	CH_egr_670	4	5	0.0000331815
Eucalyptus grandis	scaffold_6	17	CH_egr_615	5	11	0.0000110634
Eucalyptus grandis	scaffold_8	17	CH_egr_115	11	18	1.55002e-18
Eucalyptus grandis	scaffold_6	18	CH_egr_274	10	237	0.000876282
Eucalyptus grandis	scaffold_8	18	CH_egr_97	11	18	1.55002e-18
Malus domestica	10	17	CH_mdo_65	5	7	0.0000000313225
Malus domestica	11	17	CH_mdo_268	3	3	0.000375464
Manihot esculenta	scaffold03614	17	CH_mes_247	3	3	0.000782268
Oryza sativa ssp. japonica	1	17	CH_osa_108	5	6	0.00000000617697
Oryza sativa ssp. japonica	3	17	CH_osa_307	4	9	0.00007344
Oryza sativa ssp. japonica	4	17	CH_osa_383	3	3	0.000330861
Populus trichocarpa	Chr02	17	CH_ptr_224	6	17	0.000000479908
Populus trichocarpa	Chr11	17	CH_ptr_354	4	6	0.0000615509
Prunus persica	scaffold_1	17	CH_ppe_105	7	13	0.000000000109159
Prunus persica	scaffold_3	17	CH_ppe_443	3	3	0.000826195
Prunus persica	scaffold_6	17	CH_ppe_444	3	3	0.000826195
Prunus persica	scaffold_8	17	CH_ppe_288	4	5	0.0000124773
Solanum lycopersicum	ch03	17	CH_sly_456	3	3	0.00064564
Solanum lycopersicum	ch07	17	CH_sly_457	3	3	0.00064564
Vitis vinifera	chr1	17	CH_vvi_155	7	22	0.0000000343817
Vitis vinifera	chr14	17	CH_vvi_344	4	7	0.000165485
Vitis vinifera	chr19	17	CH_vvi_244	4	4	0.00000476949
Vitis vinifera	chr4	17	CH_vvi_171	5	6	0.000000102011
Vitis vinifera	chr1	18	CH_vvi_114	10	250	0.000883845
Zea mays	1	17	CH_zma_140	4	5	0.0000118251
Zea mays	10	17	CH_zma_182	4	7	0.0000824125
Zea mays	6	17	CH_zma_21	7	9	0.00000000000165465

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V