PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	17	CH_aly_115	4	12	0.00098134
Citrus sinensis	scaffold00012	17	CH_csi_149	4	5	0.000066462
Eucalyptus grandis	scaffold_4	17	CH_egr_610	6	27	0.00000934899
Eucalyptus grandis	scaffold_8	17	CH_egr_292	7	14	0.000000000342898
Eucalyptus grandis	scaffold_8	18	CH_egr_211	10	136	0.000000765127
Glycine max	Gm04	17	CH_gma_293	4	4	0.0000159109
Malus domestica	10	17	CH_mdo_153	4	5	0.0000152115
Oryza sativa ssp. japonica	2	17	CH_osa_282	5	21	0.0000329284
Solanum lycopersicum	ch12	17	CH_sly_384	4	7	0.000225853
Solanum lycopersicum	ch12	17	CH_sly_74	8	16	0.0000000000135007
Zea mays	5	17	CH_zma_107	5	8	0.00000152277

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V