PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.1
Description: signalling.in sugar and nutrient physiology

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_296	3	3	0.0000655819
Brassica rapa	A02	17	CH_bra_205	3	3	0.000114519
Capsella rubella	scaffold_4	17	CH_cru_132	4	4	0.000000121915
Citrus sinensis	scaffold00007	17	CH_csi_170	3	3	0.000133867
Citrus sinensis	scaffold00025	17	CH_csi_34	5	5	0.000000000452791
Citrus sinensis	scaffold00048	17	CH_csi_220	3	4	0.000534686
Eucalyptus grandis	scaffold_11	17	CH_egr_531	4	4	0.00000134572
Eucalyptus grandis	scaffold_3	17	CH_egr_393	5	6	0.0000000196068
Eucalyptus grandis	scaffold_3	17	CH_egr_817	3	3	0.000546492
Eucalyptus grandis	scaffold_3	17	CH_egr_57	12	16	2.10931e-24
Eucalyptus grandis	scaffold_3	17	CH_egr_238	6	6	0.00000000000787176
Eucalyptus grandis	scaffold_3	17	CH_egr_732	4	9	0.000167893
Eucalyptus grandis	scaffold_5	17	CH_egr_394	5	6	0.0000000196068
Eucalyptus grandis	scaffold_6	17	CH_egr_148	8	9	3.93782e-16
Eucalyptus grandis	scaffold_7	17	CH_egr_818	3	3	0.000546492
Eucalyptus grandis	scaffold_3	18	CH_egr_207	11	223	0.00000044645
Eucalyptus grandis	scaffold_3	18	CH_egr_55	12	16	2.10931e-24
Glycine max	Gm04	17	CH_gma_439	3	3	0.000433141
Glycine max	Gm06	17	CH_gma_441	3	3	0.000433141
Glycine max	Gm06	17	CH_gma_255	4	5	0.0000042504
Glycine max	Gm09	17	CH_gma_440	3	3	0.000433141
Glycine max	Gm14	17	CH_gma_438	3	3	0.000433141
Gossypium raimondii	Chr01	17	CH_gra_154	4	4	0.000000475595
Gossypium raimondii	Chr01	17	CH_gra_155	4	4	0.000000475595
Gossypium raimondii	Chr03	17	CH_gra_153	4	4	0.000000475595
Gossypium raimondii	Chr09	17	CH_gra_296	3	3	0.000257124
Malus domestica	11	17	CH_mdo_107	4	6	0.00000110405
Malus domestica	15	17	CH_mdo_293	3	5	0.000664426
Malus domestica	9	17	CH_mdo_131	4	8	0.00000514306
Manihot esculenta	scaffold07027	17	CH_mes_23	6	6	0.000000000000804874
Populus trichocarpa	Chr01	17	CH_ptr_99	7	10	0.00000000000771317
Populus trichocarpa	Chr02	17	CH_ptr_262	4	4	0.00000287467
Populus trichocarpa	Chr05	17	CH_ptr_223	5	8	0.000000455395
Populus trichocarpa	Chr06	17	CH_ptr_115	8	23	0.0000000000848765
Populus trichocarpa	Chr06	17	CH_ptr_70	10	29	0.0000000000000257129
Populus trichocarpa	Chr11	17	CH_ptr_312	4	5	0.0000143402
Populus trichocarpa	Chr18	17	CH_ptr_2	24	35	2.48525e-49
Populus trichocarpa	Chr06	18	CH_ptr_52	10	29	0.0000000000000257129
Populus trichocarpa	Chr18	18	CH_ptr_4	24	35	2.48525e-49
Prunus persica	scaffold_1	17	CH_ppe_132	5	5	0.00000000195617
Prunus persica	scaffold_1	17	CH_ppe_17	11	12	2.27666e-24
Prunus persica	scaffold_2	17	CH_ppe_112	7	17	0.000000000183397
Prunus persica	scaffold_7	17	CH_ppe_107	6	8	0.000000000121945
Prunus persica	scaffold_1	18	CH_ppe_15	11	12	2.27666e-24
Ricinus communis	29848	17	CH_rco_80	5	7	0.0000000140563
Ricinus communis	29908	17	CH_rco_45	6	9	0.000000000104754
Ricinus communis	30115	17	CH_rco_205	3	3	0.000178513
Vitis vinifera	chr16	17	CH_vvi_381	3	3	0.000328228
Vitis vinifera	chr18	17	CH_vvi_195	5	10	0.000000405711
Vitis vinifera	chr4	17	CH_vvi_7	17	25	5.40331e-36
Vitis vinifera	chr4	18	CH_vvi_7	17	25	5.40331e-36
Zea mays	5	17	CH_zma_166	3	3	0.0000374845

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V