PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_140	8	9	0.0000000151336
Arabidopsis thaliana	3	17	CH_ath_397	5	6	0.000984657
Capsella rubella	scaffold_2	17	CH_cru_16	16	17	1.75748e-18
Capsella rubella	scaffold_6	17	CH_cru_243	9	19	0.000127348
Capsella rubella	scaffold_2	18	CH_cru_13	16	17	1.75748e-18
Chlamydomonas reinhardtii	chromosome_11	17	CH_cre_18	8	8	0.000000108031
Citrus sinensis	scaffold00103	18	CH_csi_15	10	15	0.0000000912717
Eucalyptus grandis	scaffold_10	17	CH_egr_845	6	8	0.000849701
Eucalyptus grandis	scaffold_7	17	CH_egr_482	8	9	0.000000272557
Eucalyptus grandis	scaffold_9	17	CH_egr_526	7	7	0.000000999403
Manihot esculenta	scaffold09809	17	CH_mes_165	8	13	0.000106742
Manihot esculenta	scaffold11897	17	CH_mes_39	10	11	0.00000000152343
Manihot esculenta	scaffold11897	18	CH_mes_11	10	11	0.00000000152343
Populus trichocarpa	Chr15	17	CH_ptr_362	7	9	0.0000931214
Prunus persica	scaffold_6	18	CH_ppe_99	20	123	0.0000174239
Solanum lycopersicum	ch03	17	CH_sly_267	8	11	0.00000920283
Solanum lycopersicum	ch11	17	CH_sly_279	7	8	0.0000140217
Solanum lycopersicum	ch12	17	CH_sly_37	15	17	3.87274e-16
Solanum lycopersicum	ch05	18	CH_sly_85	11	29	0.0000463588
Solanum lycopersicum	ch12	18	CH_sly_30	15	17	3.87274e-16
Zea mays	1	17	CH_zma_266	10	30	0.000545395
Zea mays	1	17	CH_zma_44	10	12	0.00000000199637
Zea mays	8	17	CH_zma_215	6	7	0.000240207
Zea mays	1	18	CH_zma_21	10	12	0.00000000199637
Zea mays	1	18	CH_zma_43	10	30	0.000545395

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V