PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 20.2.1
Description: stress.abiotic.heat

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A03	17	CH_bra_263	4	5	0.000631829
Brassica rapa	A03	17	CH_bra_162	5	7	0.0000196083
Brassica rapa	A08	17	CH_bra_208	4	4	0.000127125
Capsella rubella	scaffold_6	17	CH_cru_75	7	8	0.000000000303457
Capsella rubella	scaffold_7	17	CH_cru_173	5	6	0.00000404697
Citrus sinensis	scaffold00024	17	CH_csi_101	5	6	0.00000257245
Citrus sinensis	scaffold00113	17	CH_csi_181	5	11	0.000191979
Eucalyptus grandis	scaffold_10	17	CH_egr_33	18	26	5.39936e-31
Eucalyptus grandis	scaffold_10	18	CH_egr_36	18	26	5.39936e-31
Glycine max	Gm07	17	CH_gma_201	6	9	0.000000691856
Malus domestica	1	17	CH_mdo_132	7	29	0.00000517634
Manihot esculenta	scaffold06512	17	CH_mes_79	6	9	0.000000390975
Oryza sativa ssp. japonica	1	17	CH_osa_126	5	5	0.0000000164495
Oryza sativa ssp. japonica	11	17	CH_osa_277	4	5	0.0000266154
Oryza sativa ssp. japonica	3	17	CH_osa_411	4	9	0.000664071
Populus trichocarpa	Chr07	17	CH_ptr_44	10	11	5.98489e-17
Populus trichocarpa	Chr08	17	CH_ptr_355	4	4	0.0000752438
Populus trichocarpa	Chr07	18	CH_ptr_41	10	11	5.98489e-17
Prunus persica	scaffold_2	17	CH_ppe_322	4	4	0.0000497014
Prunus persica	scaffold_5	17	CH_ppe_323	4	4	0.0000497014
Prunus persica	scaffold_6	17	CH_ppe_130	7	10	0.00000000152346
Prunus persica	scaffold_7	17	CH_ppe_29	14	25	1.90508e-20
Prunus persica	scaffold_7	18	CH_ppe_27	14	25	1.90508e-20
Ricinus communis	29751	17	CH_rco_62	9	25	0.00000000176872
Ricinus communis	29838	17	CH_rco_110	6	10	0.000000578193
Ricinus communis	29916	17	CH_rco_228	5	12	0.000303054
Vitis vinifera	chr13	17	CH_vvi_97	10	26	0.00000000000812025
Vitis vinifera	chr4	17	CH_vvi_173	6	9	0.000000112494
Vitis vinifera	chr13	18	CH_vvi_51	10	26	0.00000000000812025
Zea mays	10	17	CH_zma_187	5	9	0.000104375
Zea mays	3	17	CH_zma_169	5	8	0.0000466724

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V