PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_4	17	CH_cru_187	3	3	0.00000594212
Capsella rubella	scaffold_8	17	CH_cru_188	3	3	0.00000594212
Eucalyptus grandis	scaffold_1	17	CH_egr_465	4	20	0.000000204639
Glycine max	Gm01	17	CH_gma_137	5	24	0.0000000201817
Glycine max	Gm03	17	CH_gma_120	4	5	0.00000000677399
Gossypium raimondii	Chr11	17	CH_gra_97	4	4	0.000000000228831
Malus domestica	12	17	CH_mdo_40	4	9	0.00000000130069
Manihot esculenta	scaffold09360	17	CH_mes_91	3	3	0.00000114969
Populus trichocarpa	Chr16	17	CH_ptr_91	5	7	0.00000000000295071
Prunus persica	scaffold_6	17	CH_ppe_42	6	7	2.57565e-17
Ricinus communis	27985	17	CH_rco_283	2	2	0.000981981
Solanum lycopersicum	ch08	17	CH_sly_255	3	3	0.00000567197
Solanum lycopersicum	ch10	17	CH_sly_30	8	17	2.02232e-18

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V