PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 11.3.7
Description: lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_49	5	6	5.64855e-16
Brassica rapa	A07	17	CH_bra_44	4	10	0.00000000271252
Capsella rubella	scaffold_3	17	CH_cru_256	2	3	0.000228964
Citrus sinensis	scaffold00129	17	CH_csi_10	6	10	1.02605e-16
Eucalyptus grandis	scaffold_8	17	CH_egr_152	5	7	0.00000000000000186089
Gossypium raimondii	Chr05	17	CH_gra_357	2	2	0.00080416
Manihot esculenta	scaffold10563	17	CH_mes_3	8	8	1.02949e-24
Populus trichocarpa	Chr10	17	CH_ptr_90	4	4	0.00000000000187303
Ricinus communis	29981	17	CH_rco_281	2	2	0.000981981
Ricinus communis	30008	17	CH_rco_280	2	2	0.000981981
Solanum lycopersicum	ch03	17	CH_sly_478	2	2	0.000863881
Solanum lycopersicum	ch04	17	CH_sly_477	2	2	0.000863881
Solanum lycopersicum	ch09	17	CH_sly_479	2	2	0.000863881
Vitis vinifera	chr5	17	CH_vvi_394	2	4	0.000456343

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V