PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 11.1.8
Description: lipid metabolism.FA synthesis and FA elongation.acyl coa ligase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_2	17	CH_cru_68	5	7	0.000000000179668
Capsella rubella	scaffold_3	17	CH_cru_203	3	3	0.0000154757
Citrus sinensis	scaffold00004	17	CH_csi_127	3	3	0.0000198192
Eucalyptus grandis	scaffold_1	17	CH_egr_820	3	6	0.000561442
Eucalyptus grandis	scaffold_10	17	CH_egr_351	5	9	0.00000000264254
Eucalyptus grandis	scaffold_6	17	CH_egr_257	7	31	0.0000000000353416
Eucalyptus grandis	scaffold_9	17	CH_egr_151	8	20	0.00000000000000130166
Glycine max	Gm02	17	CH_gma_232	4	9	0.00000158183
Manihot esculenta	scaffold02960	17	CH_mes_58	4	4	0.0000000156506
Manihot esculenta	scaffold02960	19	CH_mes_2	4	4	0.00000000622365
Populus trichocarpa	Chr19	17	CH_ptr_171	4	4	0.0000000173728
Prunus persica	scaffold_7	17	CH_ppe_198	4	7	0.000000152246
Ricinus communis	29830	17	CH_rco_30	6	10	0.00000000000579108
Solanum lycopersicum	ch02	17	CH_sly_302	3	3	0.0000297729
Solanum lycopersicum	ch02	17	CH_sly_398	3	5	0.000297313
Solanum lycopersicum	ch07	17	CH_sly_148	4	4	0.0000000265791

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V