PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	13	CH_aly_115	5	6	0.000000000198856
Arabidopsis thaliana	3	13	CH_ath_416	3	4	0.000127108
Citrullus lanatus	Chr10	13	CH_cla_251	3	4	0.0000769291
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_405	3	6	0.000355108
Eucalyptus grandis	scaffold_1	13	CH_egr_475	6	10	0.000000000457826
Eucalyptus grandis	scaffold_10	13	CH_egr_497	6	11	0.00000000100555
Eucalyptus grandis	scaffold_11	13	CH_egr_871	4	6	0.00000869357
Eucalyptus grandis	scaffold_7	13	CH_egr_199	8	9	7.00284e-17
Eucalyptus grandis	scaffold_8	13	CH_egr_1148	3	3	0.000292671
Glycine max	Gm03	13	CH_gma_303	4	4	0.000000131376
Glycine max	Gm19	13	CH_gma_578	3	3	0.000107593
Glycine max	Gm20	13	CH_gma_365	5	17	0.000000965909
Gossypium raimondii	Chr01	13	CH_gra_376	3	3	0.000030574
Medicago truncatula	chr2	13	CH_mtr_1095	3	5	0.000349758
Medicago truncatula	chr2	13	CH_mtr_815	3	3	0.000035018
Medicago truncatula	chr3	13	CH_mtr_195	6	8	0.000000000000441673
Medicago truncatula	chr4	13	CH_mtr_574	4	7	0.000000957037
Oryza sativa ssp. japonica	5	13	CH_osa_589	3	4	0.0000697805
Prunus persica	scaffold_1	13	CH_ppe_473	3	3	0.0000284817
Prunus persica	scaffold_2	13	CH_ppe_641	3	5	0.000284396
Ricinus communis	29929	13	CH_rco_143	4	4	0.0000000581725
Solanum lycopersicum	ch01	13	CH_sly_162	5	6	0.000000000212416
Solanum lycopersicum	ch01	13	CH_sly_139	5	5	0.0000000000354307
Solanum lycopersicum	ch06	13	CH_sly_239	4	4	0.0000000374234
Solanum tuberosum	chr01	13	CH_stu_174	6	6	0.0000000000000820621
Solanum tuberosum	chr06	13	CH_stu_265	5	5	0.0000000000758556
Vitis vinifera	chr8	13	CH_vvi_137	6	9	0.0000000000203875

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V