PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR018119
Description: Strictosidine synthase, conserved region

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	13	CH_aly_277	3	3	0.00000272075
Arabidopsis lyrata	scaffold_4	13	CH_aly_317	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	13	CH_aly_278	3	3	0.00000272075
Arabidopsis lyrata	scaffold_5	13	CH_aly_318	3	4	0.0000108796
Arabidopsis thaliana	1	13	CH_ath_262	3	3	0.00000241794
Arabidopsis thaliana	3	13	CH_ath_128	4	4	0.00000000086355
Arabidopsis thaliana	3	13	CH_ath_261	3	3	0.00000241794
Brassica rapa	A02	13	CH_bra_221	3	3	0.00000654128
Capsella rubella	scaffold_2	13	CH_cru_294	3	3	0.00000594212
Capsella rubella	scaffold_5	13	CH_cru_30	7	7	3.02934e-19
Capsella rubella	scaffold_5	13	CH_cru_339	3	4	0.0000237581
Citrus sinensis	scaffold00013	13	CH_csi_62	4	4	0.000000000326275
Eucalyptus grandis	scaffold_1	13	CH_egr_836	3	3	0.00000496191
Eucalyptus grandis	scaffold_10	13	CH_egr_340	5	5	0.00000000000101645
Eucalyptus grandis	scaffold_3	13	CH_egr_1050	3	6	0.0000991251
Medicago truncatula	chr2	13	CH_mtr_972	3	8	0.000181594
Medicago truncatula	chr4	13	CH_mtr_342	5	18	0.00000000301393
Medicago truncatula	chr7	13	CH_mtr_234	5	7	0.00000000000740914
Oryza sativa ssp. japonica	6	13	CH_osa_460	3	4	0.0000101576
Oryza sativa ssp. japonica	7	13	CH_osa_337	4	11	0.000000268702
Oryza sativa ssp. japonica	9	13	CH_osa_360	4	13	0.000000581884
Solanum lycopersicum	ch03	13	CH_sly_170	4	4	0.000000000567202
Solanum tuberosum	chr07	13	CH_stu_717	3	5	0.0000396456
Thellungiella parvula	ch5-1	13	CH_tpa_151	3	3	0.00000344832
Thellungiella parvula	ch5-7	13	CH_tpa_56	4	4	0.00000000150731
Theobroma cacao	scaffold_2	13	CH_tca_336	4	18	0.00000289904
Theobroma cacao	scaffold_5	13	CH_tca_440	3	6	0.0000507021
Vitis vinifera	chr10	13	CH_vvi_215	4	4	0.0000000224019
Vitis vinifera	chr11	13	CH_vvi_420	3	3	0.0000248194
Zea mays	7	13	CH_zma_289	3	5	0.0000367396
Zea mays	8	13	CH_zma_19	8	20	2.43381e-18
Zea mays	8	14	CH_zma_15	10	107	0.0000000000000580522

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V