PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR008949
Description: Terpenoid synthase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_281	4	6	0.0000028237
Arabidopsis lyrata	scaffold_3	13	CH_aly_417	3	3	0.000124527
Arabidopsis lyrata	scaffold_5	13	CH_aly_548	3	4	0.000497524
Arabidopsis lyrata	scaffold_3	15	CH_aly_28	3	3	0.0000637432
Arabidopsis lyrata	scaffold_5	15	CH_aly_38	3	4	0.000254735
Arabidopsis thaliana	3	13	CH_ath_92	6	9	0.000000000040784
Brassica rapa	A01	13	CH_bra_38	6	7	0.00000000000354903
Brassica rapa	A03	13	CH_bra_361	3	3	0.000153888
Capsella rubella	scaffold_3	13	CH_cru_220	4	4	0.000000421881
Citrullus lanatus	Chr10	13	CH_cla_250	3	3	0.0000650279
Eucalyptus grandis	scaffold_4	13	CH_egr_94	12	15	1.79096e-24
Eucalyptus grandis	scaffold_4	14	CH_egr_87	12	15	1.79096e-24
Eucalyptus grandis	scaffold_6	14	CH_egr_241	10	173	0.00000220939
Fragaria vesca	LG1	13	CH_fve_317	4	6	0.00000573866
Gossypium raimondii	Chr09	13	CH_gra_132	6	7	0.0000000000594907
Oryza sativa ssp. japonica	4	13	CH_osa_37	14	75	1.65597e-22
Oryza sativa ssp. japonica	4	14	CH_osa_35	14	75	1.65597e-22
Populus trichocarpa	Chr19	13	CH_ptr_246	5	6	0.00000000623008
Prunus persica	scaffold_4	13	CH_ppe_101	9	35	0.0000000000000116078
Prunus persica	scaffold_4	13	CH_ppe_632	3	4	0.000262765
Prunus persica	scaffold_4	14	CH_ppe_89	10	271	0.0000000683454
Ricinus communis	30169	13	CH_rco_184	5	13	0.000000664659
Ricinus communis	30206	13	CH_rco_161	5	11	0.000000239324
Solanum lycopersicum	ch02	13	CH_sly_460	4	8	0.0000340819
Solanum lycopersicum	ch06	13	CH_sly_475	5	25	0.0000470432
Solanum tuberosum	chr01	13	CH_stu_62	11	11	1.47194e-23
Solanum tuberosum	chr02	13	CH_stu_412	6	12	0.0000000424435
Solanum tuberosum	chr06	13	CH_stu_918	5	20	0.000214168
Solanum tuberosum	chr09	13	CH_stu_208	7	8	0.00000000000119877
Solanum tuberosum	chr01	14	CH_stu_60	11	11	1.47194e-23
Solanum tuberosum	chr09	14	CH_stu_106	11	60	0.00000000000438988
Thellungiella parvula	ch3-1	13	CH_tpa_91	4	4	0.0000000473801
Theobroma cacao	scaffold_7	13	CH_tca_28	13	35	4.15309e-23
Theobroma cacao	scaffold_7	14	CH_tca_25	13	35	4.15309e-23

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V