PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00106	13	CH_atr_298	4	5	0.000033947
Capsella rubella	scaffold_3	13	CH_cru_486	4	6	0.000423808
Carica papaya	supercontig_235	13	CH_cpa_189	5	12	0.0000298007
Eucalyptus grandis	scaffold_1	13	CH_egr_859	4	4	0.00000658799
Eucalyptus grandis	scaffold_2	13	CH_egr_136	10	10	1.38426e-20
Eucalyptus grandis	scaffold_2	14	CH_egr_116	10	10	1.38426e-20
Fragaria vesca	LG6	13	CH_fve_195	6	10	0.0000000185724
Fragaria vesca	LG6	15	CH_fve_8	5	10	0.00000321629
Manihot esculenta	scaffold06591	15	CH_mes_11	4	7	0.00085812
Medicago truncatula	chr1	13	CH_mtr_1242	3	3	0.000981926
Oryza sativa ssp. japonica	9	13	CH_osa_676	7	76	0.000189043
Solanum lycopersicum	ch02	13	CH_sly_187	6	7	0.00000000214784
Solanum tuberosum	chr02	13	CH_stu_1002	4	6	0.000348417
Solanum tuberosum	chr11	13	CH_stu_114	9	9	6.98416e-17
Solanum tuberosum	chr11	14	CH_stu_138	10	108	0.00000852488
Theobroma cacao	scaffold_4	13	CH_tca_446	4	5	0.000062664
Zea mays	7	13	CH_zma_291	4	4	0.0000389699

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V