PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR006121
Description: Heavy metal-associated domain, HMA

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00018	13	CH_atr_505	3	6	0.000758957
Amborella trichopoda	scaffold00076	13	CH_atr_374	3	4	0.000152047
Arabidopsis lyrata	scaffold_8	13	CH_aly_145	5	5	0.00000000268654
Arabidopsis thaliana	5	13	CH_ath_406	4	9	0.000076824
Citrus sinensis	scaffold00007	13	CH_csi_277	3	3	0.000248309
Citrus sinensis	scaffold00034	13	CH_csi_276	3	3	0.000248309
Cucumis melo	CM3.5_scaffold00005	13	CH_cme_173	4	4	0.000000801576
Eucalyptus grandis	scaffold_1	13	CH_egr_428	6	6	0.0000000000479261
Eucalyptus grandis	scaffold_15	13	CH_egr_902	6	27	0.0000133731
Eucalyptus grandis	scaffold_5	13	CH_egr_214	9	12	3.47026e-16
Eucalyptus grandis	scaffold_5	13	CH_egr_145	10	11	5.50723e-20
Eucalyptus grandis	scaffold_5	13	CH_egr_152	11	17	1.90969e-19
Eucalyptus grandis	scaffold_8	13	CH_egr_748	6	18	0.000000860173
Eucalyptus grandis	scaffold_5	14	CH_egr_260	11	278	0.000114494
Eucalyptus grandis	scaffold_5	14	CH_egr_62	21	85	3.0134e-29
Eucalyptus grandis	scaffold_15	15	CH_egr_6	5	27	0.0000886299
Fragaria vesca	LG3	13	CH_fve_211	5	8	0.0000000347927
Fragaria vesca	scf0513158	13	CH_fve_565	3	3	0.000203407
Glycine max	Gm09	13	CH_gma_169	7	12	0.000000000133883
Glycine max	Gm16	13	CH_gma_92	7	7	0.000000000000171363
Glycine max	Gm09	14	CH_gma_66	11	182	0.00000124983
Lotus japonicus	chr4	13	CH_lja_200	3	3	0.0000961998
Lotus japonicus	chr5	13	CH_lja_247	3	4	0.000384379
Medicago truncatula	chr1	13	CH_mtr_937	4	11	0.000120449
Medicago truncatula	chr4	13	CH_mtr_1222	4	17	0.000862366
Medicago truncatula	chr6	13	CH_mtr_928	5	32	0.000107728
Oryza sativa ssp. japonica	2	13	CH_osa_207	5	6	0.00000000134636
Physcomitrella patens	scaffold_57	13	CH_ppa_3	8	11	0.0000000000000137214
Physcomitrella patens	scaffold_57	15	CH_ppa_2	5	9	0.000000353878
Populus trichocarpa	Chr06	13	CH_ptr_21	16	22	8.42801e-32
Populus trichocarpa	Chr17	13	CH_ptr_299	5	6	0.0000000647698
Populus trichocarpa	Chr06	14	CH_ptr_22	16	22	8.42801e-32
Prunus persica	scaffold_4	13	CH_ppe_653	3	3	0.000373403
Prunus persica	scaffold_6	13	CH_ppe_408	4	5	0.00000429902
Solanum tuberosum	chr11	13	CH_stu_937	3	3	0.000254735
Thellungiella parvula	ch6-6	13	CH_tpa_94	5	7	0.0000000814425
Theobroma cacao	scaffold_6	13	CH_tca_224	5	8	0.0000000584187
Vitis vinifera	chr16	13	CH_vvi_211	5	6	0.0000000173947
Vitis vinifera	chrUn	13	CH_vvi_141	6	7	0.0000000000496114

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V