PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00045	13	CH_atr_267	3	3	0.00000907987
Arabidopsis lyrata	scaffold_5	13	CH_aly_161	4	6	0.0000000154517
Arabidopsis thaliana	3	13	CH_ath_175	4	7	0.0000000402609
Capsella rubella	scaffold_5	13	CH_cru_135	4	4	0.00000000182092
Manihot esculenta	scaffold12455	13	CH_mes_149	3	3	0.00000113511
Medicago truncatula	chr6	13	CH_mtr_316	4	4	0.000000000767073
Oryza sativa ssp. japonica	3	13	CH_osa_502	3	6	0.0000213777
Prunus persica	scaffold_7	13	CH_ppe_338	4	8	0.000000469842
Solanum lycopersicum	ch06	13	CH_sly_369	3	3	0.00000402925
Vitis vinifera	chr6	13	CH_vvi_213	4	4	0.0000000190831

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V