PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000864
Description: Proteinase inhibitor I13, potato inhibitor I

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	13	CH_ath_562	2	2	0.000892804
Beta vulgaris	Bvchr5.sca024	13	CH_bvu_7	8	9	3.66485e-23
Capsella rubella	scaffold_4	13	CH_cru_322	3	5	0.0000144107
Capsella rubella	scaffold_8	13	CH_cru_71	5	5	0.000000000000117612
Citrullus lanatus	Chr5	13	CH_cla_107	4	7	0.00000000453009
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_40	6	10	3.47668e-16
Fragaria vesca	LG1	13	CH_fve_57	5	11	0.0000000000000445436
Glycine max	Gm20	13	CH_gma_298	3	3	0.000000114998
Gossypium raimondii	Chr07	13	CH_gra_131	4	4	0.0000000000576571
Gossypium raimondii	Chr09	13	CH_gra_258	3	3	0.000000359694
Lotus japonicus	chr5	13	CH_lja_44	3	3	0.00000000677941
Malus domestica	13	13	CH_mdo_59	4	8	0.000000000722662
Manihot esculenta	scaffold11998	13	CH_mes_48	4	4	0.0000000000384811
Medicago truncatula	chr1	13	CH_mtr_734	3	8	0.0000130379
Medicago truncatula	chr3	13	CH_mtr_401	4	13	0.0000000204208
Oryza sativa ssp. japonica	12	13	CH_osa_427	3	4	0.00000347525
Oryza sativa ssp. japonica	2	13	CH_osa_109	5	6	0.000000000000219043
Populus trichocarpa	Chr10	13	CH_ptr_61	7	7	9.31771e-20
Populus trichocarpa	Chr16	13	CH_ptr_220	4	4	0.00000000179551
Prunus persica	scaffold_1	13	CH_ppe_91	6	10	7.72396e-16
Ricinus communis	29883	13	CH_rco_137	3	3	0.00000005786
Solanum lycopersicum	ch09	13	CH_sly_4	14	14	2.48957e-43
Solanum lycopersicum	ch09	14	CH_sly_5	14	14	2.48957e-43
Solanum tuberosum	chr09	13	CH_stu_69	8	8	7.69662e-23
Solanum tuberosum	chr10	13	CH_stu_340	4	4	0.0000000026823
Theobroma cacao	scaffold_10r	13	CH_tca_36	7	10	1.62739e-18
Vitis vinifera	chr5	13	CH_vvi_148	4	5	0.0000000000957251
Zea mays	1	13	CH_zma_111	5	10	0.0000000102455
Zea mays	1	13	CH_zma_132	4	4	0.0000000427159
Zea mays	10	13	CH_zma_133	4	4	0.0000000427159
Zea mays	4	13	CH_zma_407	3	4	0.000174087
Zea mays	5	13	CH_zma_24	8	14	9.04722e-17
Zea mays	6	13	CH_zma_156	4	5	0.000000213411
Zea mays	UNKNOWN	13	CH_zma_214	4	8	0.00000298068

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V