PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00009	13	CH_atr_297	4	7	0.0000327504
Arabidopsis lyrata	scaffold_7	13	CH_aly_370	4	6	0.0000626767
Capsella rubella	scaffold_7	13	CH_cru_510	4	8	0.000458064
Chlamydomonas reinhardtii	chromosome_11	13	CH_cre_31	5	8	0.0000000256101
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_490	3	3	0.000868122
Cucumis melo	CM3.5_scaffold00047	13	CH_cme_312	4	7	0.0000946464
Eucalyptus grandis	scaffold_10	13	CH_egr_820	8	65	0.00000365046
Eucalyptus grandis	scaffold_5	13	CH_egr_288	8	10	0.0000000000000385359
Eucalyptus grandis	scaffold_10	14	CH_egr_257	11	247	0.000067525
Fragaria vesca	LG7	13	CH_fve_453	5	18	0.0000634114
Glycine max	Gm03	13	CH_gma_101	8	11	0.000000000000606377
Glycine max	Gm07	13	CH_gma_175	6	6	0.000000000235814
Glycine max	Gm03	14	CH_gma_55	10	55	0.00000000142986
Glycine max	Gm07	14	CH_gma_64	10	97	0.000000529209
Medicago truncatula	chr3	13	CH_mtr_336	6	11	0.00000000230189
Medicago truncatula	chr8	13	CH_mtr_46	14	29	8.12239e-26
Medicago truncatula	chr8	14	CH_mtr_48	14	29	8.12239e-26
Prunus persica	scaffold_2	13	CH_ppe_300	6	14	0.000000104779
Prunus persica	scaffold_2	14	CH_ppe_104	10	185	0.0000208875
Solanum tuberosum	chr10	13	CH_stu_936	7	75	0.000246202
Thellungiella parvula	ch7-4	13	CH_tpa_17	8	9	0.0000000000000231842
Thellungiella parvula	ch7-4	14	CH_tpa_12	12	294	0.000163075

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V