PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	5	CH_aly_14	10	51	0.000000000000613792
Arabidopsis lyrata	scaffold_7	6	CH_aly_18	10	51	0.000000000000613792
Arabidopsis thaliana	4	5	CH_ath_15	10	17	6.85422e-19
Arabidopsis thaliana	4	6	CH_ath_17	10	17	6.85422e-19
Brassica rapa	A08	2	CH_bra_115	4	5	0.00000688651
Brassica rapa	A08	3	CH_bra_142	4	5	0.00000688651
Capsella rubella	scaffold_7	5	CH_cru_14	10	43	0.000000000000170077
Capsella rubella	scaffold_7	6	CH_cru_20	10	43	0.000000000000170077
Eucalyptus grandis	scaffold_8	2	CH_egr_19	16	21	3.86246e-32
Eucalyptus grandis	scaffold_8	3	CH_egr_25	16	21	3.86246e-32
Eucalyptus grandis	scaffold_8	5	CH_egr_23	16	21	3.86246e-32
Glycine max	Gm09	5	CH_gma_34	13	260	0.00000000051433
Manihot esculenta	scaffold08799	2	CH_mes_15	6	6	0.0000000000143214
Manihot esculenta	scaffold10173	2	CH_mes_72	4	4	0.00000173688
Manihot esculenta	scaffold08799	3	CH_mes_22	6	6	0.0000000000143214
Manihot esculenta	scaffold10173	3	CH_mes_103	4	4	0.00000173688
Medicago truncatula	chr4	2	CH_mtr_536	3	3	0.000154924
Medicago truncatula	chr4	3	CH_mtr_667	3	3	0.000154924
Populus trichocarpa	Chr07	2	CH_ptr_363	4	7	0.000208825
Populus trichocarpa	Chr07	3	CH_ptr_456	4	7	0.000208825
Ricinus communis	29780	2	CH_rco_85	6	19	0.000000270888
Ricinus communis	29780	3	CH_rco_114	6	19	0.000000270888
Solanum lycopersicum	ch02	8	CH_sly_17	3	8	0.000988025
Solanum lycopersicum	ch02	9	CH_sly_29	3	8	0.000988025
Thellungiella parvula	ch7-6	5	CH_tpa_1	10	15	1.67756e-19
Thellungiella parvula	ch7-6	6	CH_tpa_2	10	15	1.67756e-19

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V