PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0047746
Description: chlorophyllase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	2	CH_atr_84	3	7	0.00000032791
Amborella trichopoda	scaffold00002	3	CH_atr_133	3	7	0.00000032791
Eucalyptus grandis	scaffold_2	1	CH_egr_150	4	4	0.000000000000598399
Eucalyptus grandis	scaffold_2	2	CH_egr_189	4	4	0.000000000000598399
Eucalyptus grandis	scaffold_2	3	CH_egr_217	4	4	0.000000000000598399
Fragaria vesca	LG4	2	CH_fve_292	2	2	0.000359271
Fragaria vesca	LG4	3	CH_fve_373	2	2	0.000359271
Glycine max	Gm07	2	CH_gma_171	3	3	0.000000587313
Glycine max	Gm07	3	CH_gma_212	3	3	0.000000587313
Gossypium raimondii	Chr13	2	CH_gra_370	2	3	0.000961658
Gossypium raimondii	Chr13	3	CH_gra_439	2	3	0.000961658
Manihot esculenta	scaffold04457	2	CH_mes_237	2	2	0.000949127
Manihot esculenta	scaffold11998	2	CH_mes_238	2	2	0.000949127
Manihot esculenta	scaffold04457	3	CH_mes_306	2	2	0.000949127
Manihot esculenta	scaffold11998	3	CH_mes_307	2	2	0.000949127
Medicago truncatula	chr1	2	CH_mtr_505	2	2	0.0000920358
Medicago truncatula	chr1	3	CH_mtr_629	2	2	0.0000920358
Oryza sativa ssp. japonica	2	1	CH_osa_291	2	2	0.000107045
Oryza sativa ssp. japonica	2	2	CH_osa_301	2	2	0.000107045
Oryza sativa ssp. japonica	2	3	CH_osa_356	2	2	0.000107045
Oryza sativa ssp. japonica	2	7	CH_osa_32	2	2	0.000113212
Oryza sativa ssp. japonica	2	8	CH_osa_30	2	2	0.000113212
Oryza sativa ssp. japonica	2	9	CH_osa_32	2	2	0.000113212
Populus trichocarpa	Chr05	1	CH_ptr_353	2	2	0.000747031
Populus trichocarpa	Chr05	2	CH_ptr_439	2	2	0.000747031
Populus trichocarpa	Chr05	3	CH_ptr_544	2	2	0.000747031
Ricinus communis	29883	2	CH_rco_68	3	3	0.00000005786
Ricinus communis	29883	3	CH_rco_98	3	3	0.00000005786
Vitis vinifera	chr7	2	CH_vvi_163	3	6	0.000000678687
Vitis vinifera	chr7	3	CH_vvi_205	3	6	0.000000678687

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V