PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016844
Description: strictosidine synthase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	1	CH_aly_119	3	3	0.00000272075
Arabidopsis lyrata	scaffold_4	1	CH_aly_136	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	1	CH_aly_137	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	1	CH_aly_120	3	3	0.00000272075
Arabidopsis lyrata	scaffold_2	2	CH_aly_155	3	3	0.00000272075
Arabidopsis lyrata	scaffold_4	2	CH_aly_182	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	2	CH_aly_183	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	2	CH_aly_156	3	3	0.00000272075
Arabidopsis lyrata	scaffold_2	3	CH_aly_174	3	3	0.00000272075
Arabidopsis lyrata	scaffold_4	3	CH_aly_212	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	3	CH_aly_213	3	4	0.0000108796
Arabidopsis lyrata	scaffold_5	3	CH_aly_175	3	3	0.00000272075
Arabidopsis thaliana	1	1	CH_ath_159	3	3	0.00000241794
Arabidopsis thaliana	1	2	CH_ath_190	3	3	0.00000241794
Arabidopsis thaliana	1	3	CH_ath_202	3	3	0.00000241794
Beta vulgaris	Bvchr3.sca010	3	CH_bvu_137	3	3	0.00000117492
Brassica rapa	A02	1	CH_bra_79	3	3	0.00000654128
Brassica rapa	A02	2	CH_bra_112	3	3	0.00000654128
Brassica rapa	A02	3	CH_bra_146	3	3	0.00000849517
Brassica rapa	A04	3	CH_bra_215	3	5	0.0000848779
Capsella rubella	scaffold_2	1	CH_cru_121	3	3	0.00000594212
Capsella rubella	scaffold_5	1	CH_cru_140	3	4	0.0000237581
Capsella rubella	scaffold_5	1	CH_cru_9	7	7	3.02934e-19
Capsella rubella	scaffold_2	2	CH_cru_171	3	3	0.00000594212
Capsella rubella	scaffold_5	2	CH_cru_187	3	4	0.0000237581
Capsella rubella	scaffold_5	2	CH_cru_14	7	7	3.02934e-19
Capsella rubella	scaffold_2	3	CH_cru_199	3	3	0.00000594212
Capsella rubella	scaffold_5	3	CH_cru_223	3	4	0.0000237581
Capsella rubella	scaffold_5	3	CH_cru_20	7	7	3.02934e-19
Citrus sinensis	scaffold00013	1	CH_csi_29	4	4	0.000000000326275
Citrus sinensis	scaffold00013	2	CH_csi_31	4	4	0.000000000326275
Citrus sinensis	scaffold00013	3	CH_csi_41	4	4	0.000000000326275
Eucalyptus grandis	scaffold_1	1	CH_egr_402	3	3	0.00000496191
Eucalyptus grandis	scaffold_10	1	CH_egr_153	5	5	0.00000000000101645
Eucalyptus grandis	scaffold_3	1	CH_egr_517	3	6	0.0000991251
Eucalyptus grandis	scaffold_1	2	CH_egr_508	3	3	0.00000496191
Eucalyptus grandis	scaffold_10	2	CH_egr_193	5	5	0.00000000000101645
Eucalyptus grandis	scaffold_3	2	CH_egr_635	3	6	0.0000991251
Eucalyptus grandis	scaffold_1	3	CH_egr_579	3	3	0.00000496191
Eucalyptus grandis	scaffold_10	3	CH_egr_223	5	5	0.00000000000101645
Eucalyptus grandis	scaffold_3	3	CH_egr_712	3	6	0.0000991251
Malus domestica	2	3	CH_mdo_94	3	3	0.000000268462
Medicago truncatula	chr2	1	CH_mtr_454	3	8	0.000181594
Medicago truncatula	chr4	1	CH_mtr_161	5	18	0.00000000301393
Medicago truncatula	chr7	1	CH_mtr_101	5	7	0.00000000000740914
Medicago truncatula	chr8	1	CH_mtr_268	4	12	0.000000541247
Medicago truncatula	chr2	2	CH_mtr_547	3	8	0.000181594
Medicago truncatula	chr4	2	CH_mtr_190	5	18	0.00000000301393
Medicago truncatula	chr7	2	CH_mtr_118	5	7	0.00000000000740914
Medicago truncatula	chr8	2	CH_mtr_315	4	12	0.000000541247
Medicago truncatula	chr2	3	CH_mtr_457	3	3	0.00000573186
Medicago truncatula	chr2	3	CH_mtr_762	3	8	0.000320461
Medicago truncatula	chr4	3	CH_mtr_260	5	18	0.00000000807728
Medicago truncatula	chr7	3	CH_mtr_157	5	7	0.0000000000198703
Medicago truncatula	chr8	3	CH_mtr_210	5	12	0.000000000748142
Oryza sativa ssp. japonica	6	1	CH_osa_214	3	4	0.0000101576
Oryza sativa ssp. japonica	7	1	CH_osa_153	4	11	0.000000268702
Oryza sativa ssp. japonica	9	1	CH_osa_165	4	13	0.000000581884
Oryza sativa ssp. japonica	6	2	CH_osa_208	3	4	0.0000101576
Oryza sativa ssp. japonica	7	2	CH_osa_147	4	11	0.000000268702
Oryza sativa ssp. japonica	9	2	CH_osa_160	4	13	0.000000581884
Oryza sativa ssp. japonica	6	3	CH_osa_254	3	4	0.0000135253
Oryza sativa ssp. japonica	7	3	CH_osa_173	4	11	0.000000397473
Oryza sativa ssp. japonica	9	3	CH_osa_189	4	13	0.000000860695
Populus trichocarpa	Chr16	3	CH_ptr_262	3	3	0.00000106405
Solanum lycopersicum	ch03	1	CH_sly_99	4	4	0.000000000567202
Solanum lycopersicum	ch03	2	CH_sly_99	4	4	0.000000000567202
Solanum lycopersicum	ch03	3	CH_sly_134	4	4	0.000000000567202
Solanum tuberosum	chr03	1	CH_stu_64	6	6	2.49883e-16
Solanum tuberosum	chr07	1	CH_stu_346	3	5	0.0000396456
Solanum tuberosum	chr03	2	CH_stu_63	6	6	2.49883e-16
Solanum tuberosum	chr07	2	CH_stu_377	3	5	0.0000396456
Solanum tuberosum	chr03	3	CH_stu_73	7	7	4.57492e-19
Solanum tuberosum	chr07	3	CH_stu_574	3	5	0.0000748085
Thellungiella parvula	ch5-1	1	CH_tpa_60	3	3	0.00000344832
Thellungiella parvula	ch5-7	1	CH_tpa_20	4	4	0.00000000150731
Thellungiella parvula	ch5-1	2	CH_tpa_85	3	3	0.00000344832
Thellungiella parvula	ch5-7	2	CH_tpa_32	4	4	0.00000000150731
Thellungiella parvula	ch5-1	3	CH_tpa_99	3	3	0.00000344832
Thellungiella parvula	ch5-7	3	CH_tpa_36	4	4	0.00000000150731
Theobroma cacao	scaffold_2	1	CH_tca_166	4	18	0.00000289904
Theobroma cacao	scaffold_5	1	CH_tca_213	3	6	0.0000507021
Theobroma cacao	scaffold_2	2	CH_tca_177	4	18	0.00000289904
Theobroma cacao	scaffold_5	2	CH_tca_230	3	6	0.0000507021
Theobroma cacao	scaffold_2	3	CH_tca_108	5	18	0.00000000603605
Theobroma cacao	scaffold_5	3	CH_tca_136	4	6	0.0000000259306
Vitis vinifera	chr10	1	CH_vvi_111	4	4	0.0000000224019
Vitis vinifera	chr4	1	CH_vvi_33	8	11	1.56885e-18
Vitis vinifera	chr10	2	CH_vvi_120	4	4	0.0000000224019
Vitis vinifera	chr4	2	CH_vvi_33	8	11	1.56885e-18
Vitis vinifera	chr10	3	CH_vvi_162	4	4	0.0000000401638
Vitis vinifera	chr17	3	CH_vvi_313	3	3	0.0000381413
Vitis vinifera	chr4	3	CH_vvi_29	9	11	1.60837e-21
Zea mays	1	1	CH_zma_130	3	5	0.0000367396
Zea mays	7	1	CH_zma_131	3	5	0.0000367396
Zea mays	8	1	CH_zma_12	8	20	2.43381e-18
Zea mays	1	2	CH_zma_131	3	5	0.0000367396
Zea mays	7	2	CH_zma_132	3	5	0.0000367396
Zea mays	8	2	CH_zma_9	8	20	2.43381e-18
Zea mays	1	3	CH_zma_81	4	7	0.0000000975934
Zea mays	7	3	CH_zma_204	3	5	0.0000583824
Zea mays	8	3	CH_zma_11	8	20	1.02886e-17
Zea mays	8	4	CH_zma_9	10	107	0.0000000000000580522
Zea mays	8	5	CH_zma_10	10	107	0.0000000000000580522
Zea mays	8	6	CH_zma_11	10	107	0.0000000000000344013

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V