PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0015171
Description: amino acid transmembrane transporter activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00111	1	CH_atr_107	3	3	0.00000341081
Amborella trichopoda	scaffold00166	3	CH_atr_267	3	4	0.000204309
Beta vulgaris	Bvchr9.sca025	3	CH_bvu_264	3	3	0.000149103
Carica papaya	supercontig_12	2	CH_cpa_104	3	3	0.0000516612
Carica papaya	supercontig_12	3	CH_cpa_181	3	3	0.0000925349
Citrus sinensis	scaffold00023	3	CH_csi_185	3	3	0.000214486
Eucalyptus grandis	scaffold_11	1	CH_egr_527	3	5	0.000149613
Eucalyptus grandis	scaffold_6	3	CH_egr_863	3	3	0.00077883
Fragaria vesca	LG2	1	CH_fve_136	3	3	0.00000828259
Fragaria vesca	LG3	1	CH_fve_202	3	6	0.000165425
Fragaria vesca	LG2	2	CH_fve_69	6	17	0.00000000198512
Fragaria vesca	LG2	3	CH_fve_97	5	6	0.00000000440486
Glycine max	Gm10	1	CH_gma_216	3	3	0.0000218908
Glycine max	Gm20	1	CH_gma_217	3	3	0.0000218908
Glycine max	Gm18	2	CH_gma_377	3	3	0.000363171
Glycine max	Gm18	3	CH_gma_531	3	3	0.000606288
Malus domestica	11	1	CH_mdo_92	3	3	0.00000425065
Malus domestica	10	3	CH_mdo_44	5	7	0.0000000035723
Manihot esculenta	scaffold03614	1	CH_mes_74	3	3	0.00000491883
Medicago truncatula	chr6	1	CH_mtr_87	5	5	0.000000000000789034
Medicago truncatula	chr8	1	CH_mtr_237	4	8	0.000000143836
Medicago truncatula	chr3	2	CH_mtr_223	5	10	0.0000000187388
Medicago truncatula	chr3	3	CH_mtr_296	5	10	0.000000048368
Oryza sativa ssp. japonica	1	1	CH_osa_66	5	6	0.0000000000058875
Oryza sativa ssp. japonica	3	1	CH_osa_155	4	9	0.000000300871
Populus trichocarpa	Chr11	2	CH_ptr_234	4	6	0.00000479297
Populus trichocarpa	Chr04	3	CH_ptr_497	3	3	0.000380752
Populus trichocarpa	Chr11	3	CH_ptr_331	4	6	0.0000117654
Prunus persica	scaffold_1	1	CH_ppe_214	3	3	0.0000103669
Prunus persica	scaffold_6	1	CH_ppe_215	3	3	0.0000103669
Prunus persica	scaffold_1	2	CH_ppe_60	7	13	0.00000000000100769
Prunus persica	scaffold_8	3	CH_ppe_257	4	5	0.00000273559
Ricinus communis	29835	1	CH_rco_162	3	5	0.000222428
Solanum tuberosum	chr05	1	CH_stu_293	3	3	0.00000554258
Solanum tuberosum	chr05	3	CH_stu_662	3	3	0.00024366
Solanum tuberosum	chr10	3	CH_stu_661	3	3	0.00024366
Vitis vinifera	chr2	1	CH_vvi_191	3	3	0.0000112854
Zea mays	1	1	CH_zma_49	4	5	0.0000000241273
Zea mays	3	1	CH_zma_185	3	6	0.000174293
Zea mays	6	3	CH_zma_20	7	9	0.0000000000000356422

Available child term results

GO term	Description	Number of clusters
GO:0000064	L-ornithine transmembrane transporter activity	2
GO:0015172	acidic amino acid transmembrane transporter activity	2
GO:0015173	aromatic amino acid transmembrane transporter activity	2
GO:0015174	basic amino acid transmembrane transporter activity	4
GO:0015175	neutral amino acid transmembrane transporter activity	4
GO:0015180	L-alanine transmembrane transporter activity	6
GO:0015185	gamma-aminobutyric acid transmembrane transporter activity	13
GO:0015193	L-proline transmembrane transporter activity	15
GO:0015199	amino-acid betaine transmembrane transporter activity	2
GO:0015326	cationic amino acid transmembrane transporter activity	6
GO:0034639	L-amino acid efflux transmembrane transporter activity	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V