PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0010309
Description: acireductone dioxygenase [iron(II)-requiring] activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	1	CH_atr_155	2	2	0.0000790358
Amborella trichopoda	scaffold00002	2	CH_atr_162	2	2	0.0000790358
Amborella trichopoda	scaffold00002	3	CH_atr_245	2	2	0.0000790358
Citrus sinensis	scaffold00011	1	CH_csi_110	2	2	0.000115814
Citrus sinensis	scaffold00011	2	CH_csi_132	2	2	0.000115814
Citrus sinensis	scaffold00011	3	CH_csi_164	2	2	0.000115814
Eucalyptus grandis	scaffold_2	1	CH_egr_362	3	6	0.0000010239
Eucalyptus grandis	scaffold_2	2	CH_egr_458	3	6	0.0000010239
Eucalyptus grandis	scaffold_2	3	CH_egr_521	3	6	0.0000010239
Fragaria vesca	LG4	1	CH_fve_176	2	2	0.0000598784
Fragaria vesca	LG4	2	CH_fve_201	2	2	0.0000598784
Fragaria vesca	LG4	3	CH_fve_335	2	2	0.000179635
Glycine max	Gm20	1	CH_gma_317	2	2	0.00037
Glycine max	Gm20	2	CH_gma_393	2	2	0.00037
Glycine max	Gm20	3	CH_gma_466	2	2	0.00037
Medicago truncatula	chr1	1	CH_mtr_421	2	3	0.0000920344
Medicago truncatula	chr1	2	CH_mtr_493	2	3	0.0000920344
Medicago truncatula	chr1	3	CH_mtr_609	2	3	0.0000920344
Oryza sativa ssp. japonica	10	1	CH_osa_324	2	2	0.000214091
Oryza sativa ssp. japonica	10	2	CH_osa_340	2	2	0.000214091
Oryza sativa ssp. japonica	10	3	CH_osa_398	2	2	0.000214091
Populus trichocarpa	Chr08	1	CH_ptr_280	2	2	0.000149406
Populus trichocarpa	Chr08	2	CH_ptr_339	2	2	0.000149406
Populus trichocarpa	Chr08	3	CH_ptr_427	2	2	0.000149406
Prunus persica	scaffold_1	1	CH_ppe_251	2	2	0.0000720851
Prunus persica	scaffold_1	2	CH_ppe_289	2	2	0.0000720851
Prunus persica	scaffold_1	3	CH_ppe_416	2	2	0.000216255
Solanum lycopersicum	ch09	1	CH_sly_119	3	3	0.0000000049378
Solanum lycopersicum	ch09	2	CH_sly_121	3	3	0.0000000049378
Solanum lycopersicum	ch09	3	CH_sly_161	3	3	0.0000000049378
Solanum tuberosum	chr09	1	CH_stu_191	3	3	0.0000000194477
Solanum tuberosum	chr09	2	CH_stu_206	3	3	0.0000000194477
Solanum tuberosum	chr09	3	CH_stu_347	3	3	0.000000170167
Theobroma cacao	scaffold_4	2	CH_tca_240	2	2	0.000068171
Theobroma cacao	scaffold_4	3	CH_tca_301	2	2	0.000068171
Vitis vinifera	chr5	1	CH_vvi_221	2	2	0.0000752106
Vitis vinifera	chr5	2	CH_vvi_251	2	2	0.0000752106
Vitis vinifera	chr5	3	CH_vvi_341	2	2	0.0000752106

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V