PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0010215
Description: cellulose microfibril organization

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00047	1	CH_atr_87	3	3	0.000000327962
Amborella trichopoda	scaffold00047	2	CH_atr_97	3	3	0.000000787109
Beta vulgaris	Bvchr2.sca001	1	CH_bvu_95	3	3	0.00000117492
Beta vulgaris	Bvchr2.sca001	2	CH_bvu_117	3	3	0.00000230787
Citrus sinensis	scaffold00030	1	CH_csi_64	3	3	0.000000704223
Citrus sinensis	scaffold00030	2	CH_csi_79	3	3	0.00000169013
Eucalyptus grandis	scaffold_11	1	CH_egr_217	4	4	0.000000000598997
Eucalyptus grandis	scaffold_11	2	CH_egr_306	4	4	0.00000000142419
Fragaria vesca	LG5	1	CH_fve_51	4	4	0.000000000644772
Fragaria vesca	LG6	1	CH_fve_161	3	6	0.0000391215
Fragaria vesca	LG5	2	CH_fve_65	4	4	0.00000000117231
Fragaria vesca	LG6	2	CH_fve_209	3	6	0.0000601789
Glycine max	Gm18	1	CH_gma_177	3	3	0.00000415637
Glycine max	Gm18	2	CH_gma_256	3	3	0.0000173237
Manihot esculenta	scaffold06656	1	CH_mes_65	3	3	0.00000222969
Manihot esculenta	scaffold06656	2	CH_mes_85	3	3	0.00000614854
Medicago truncatula	chr6	2	CH_mtr_391	3	4	0.00000869458
Physcomitrella patens	scaffold_62	3	CH_ppa_41	3	3	0.00000871985
Populus trichocarpa	Chr15	1	CH_ptr_188	3	3	0.00000135425
Populus trichocarpa	Chr15	2	CH_ptr_232	3	3	0.00000424132
Prunus persica	scaffold_3	1	CH_ppe_186	3	3	0.00000222927
Prunus persica	scaffold_5	1	CH_ppe_100	4	5	0.00000000401654
Prunus persica	scaffold_3	2	CH_ppe_225	3	3	0.00000530037
Prunus persica	scaffold_5	2	CH_ppe_128	4	5	0.0000000133682
Ricinus communis	30138	1	CH_rco_79	3	3	0.0000002893
Ricinus communis	30138	2	CH_rco_102	3	3	0.00000081004
Solanum lycopersicum	ch03	1	CH_sly_111	4	4	0.00000000134859
Solanum lycopersicum	ch03	2	CH_sly_113	4	4	0.00000000274535
Solanum tuberosum	chr03	1	CH_stu_284	3	3	0.0000033061
Solanum tuberosum	chr03	2	CH_stu_320	3	3	0.00000554258
Theobroma cacao	scaffold_3	1	CH_tca_88	4	7	0.0000000329025
Theobroma cacao	scaffold_3	2	CH_tca_113	4	7	0.0000000907015

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V