PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005524
Description: ATP binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_12	1	CH_cre_63	19	63	0.000670862
Chlamydomonas reinhardtii	chromosome_12	2	CH_cre_80	19	63	0.000965749
Chlamydomonas reinhardtii	chromosome_12	4	CH_cre_14	19	63	0.000670862
Chlamydomonas reinhardtii	chromosome_12	5	CH_cre_18	19	63	0.000965749
Citrus sinensis	scaffold00085	6	CH_csi_39	12	19	0.000680988
Cucumis melo	CM3.5_scaffold00018	6	CH_cme_71	12	25	0.000989281
Eucalyptus grandis	scaffold_10	1	CH_egr_352	27	68	0.000000706969
Eucalyptus grandis	scaffold_11	1	CH_egr_75	27	33	3.01337e-18
Eucalyptus grandis	scaffold_6	1	CH_egr_287	21	38	0.0000000448696
Eucalyptus grandis	scaffold_10	2	CH_egr_465	27	68	0.00000105516
Eucalyptus grandis	scaffold_11	2	CH_egr_109	27	33	4.77715e-18
Eucalyptus grandis	scaffold_6	2	CH_egr_378	21	38	0.0000000628552
Eucalyptus grandis	scaffold_11	3	CH_egr_124	28	33	3.3591e-18
Eucalyptus grandis	scaffold_8	3	CH_egr_627	12	15	0.0000270576
Eucalyptus grandis	scaffold_11	4	CH_egr_69	27	33	3.01337e-18
Eucalyptus grandis	scaffold_11	4	CH_egr_77	67	201	1.19784e-16
Eucalyptus grandis	scaffold_3	4	CH_egr_210	11	14	0.0000438126
Eucalyptus grandis	scaffold_6	4	CH_egr_150	21	38	0.0000000448696
Eucalyptus grandis	scaffold_11	5	CH_egr_80	68	201	6.19408e-17
Eucalyptus grandis	scaffold_11	5	CH_egr_75	27	33	4.77715e-18
Eucalyptus grandis	scaffold_3	5	CH_egr_244	11	14	0.000052799
Eucalyptus grandis	scaffold_6	5	CH_egr_174	21	38	0.0000000628552
Eucalyptus grandis	scaffold_11	6	CH_egr_89	28	33	3.3591e-18
Eucalyptus grandis	scaffold_8	6	CH_egr_267	12	15	0.0000270576
Fragaria vesca	LG7	3	CH_fve_35	16	17	0.000000000000406527
Fragaria vesca	LG7	6	CH_fve_20	16	17	0.000000000000406527
Glycine max	Gm16	6	CH_gma_93	11	14	0.000132764
Gossypium raimondii	Chr09	1	CH_gra_176	21	54	0.0000346321
Gossypium raimondii	Chr11	3	CH_gra_324	11	15	0.000197412
Gossypium raimondii	Chr11	4	CH_gra_77	53	275	0.000453462
Gossypium raimondii	Chr11	5	CH_gra_86	53	275	0.000838655
Gossypium raimondii	Chr11	6	CH_gra_89	11	15	0.000197412
Malus domestica	5	1	CH_mdo_204	17	63	0.000434654
Malus domestica	9	1	CH_mdo_193	13	35	0.000319444
Malus domestica	5	2	CH_mdo_269	17	63	0.000548606
Malus domestica	9	2	CH_mdo_233	13	35	0.000385753
Malus domestica	9	4	CH_mdo_33	13	35	0.000319444
Malus domestica	9	5	CH_mdo_45	13	35	0.000385753
Medicago truncatula	chr4	1	CH_mtr_491	14	47	0.000322441
Medicago truncatula	chr4	2	CH_mtr_645	14	47	0.000525439
Populus trichocarpa	Chr19	3	CH_ptr_219	13	14	0.0000000872319
Populus trichocarpa	Chr01	4	CH_ptr_52	66	255	0.0000000000646831
Populus trichocarpa	Chr19	6	CH_ptr_89	13	14	0.0000000872319
Ricinus communis	30146	2	CH_rco_213	13	27	0.000383828
Ricinus communis	30146	3	CH_rco_226	14	27	0.0001732
Ricinus communis	30146	5	CH_rco_34	13	27	0.000383828
Solanum lycopersicum	ch02	2	CH_sly_434	10	16	0.000464383
Solanum lycopersicum	ch08	3	CH_sly_147	30	75	0.00000000196116
Solanum lycopersicum	ch02	4	CH_sly_103	10	16	0.000396922
Solanum lycopersicum	ch02	5	CH_sly_115	10	16	0.000464383
Solanum lycopersicum	ch08	6	CH_sly_72	30	75	0.00000000196116
Solanum tuberosum	chr10	3	CH_stu_676	16	34	0.000303965
Zea mays	6	3	CH_zma_186	13	23	0.000049043
Zea mays	6	6	CH_zma_36	13	23	0.000049043

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V