PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004672
Description: protein kinase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	1	CH_ath_49	12	16	0.0000000000969552
Arabidopsis thaliana	3	1	CH_ath_127	8	9	0.000000439477
Arabidopsis thaliana	4	1	CH_ath_12	20	23	1.3372e-22
Arabidopsis thaliana	3	2	CH_ath_161	8	9	0.000000461901
Arabidopsis thaliana	1	4	CH_ath_20	12	16	0.0000000000969552
Arabidopsis thaliana	3	4	CH_ath_67	22	133	0.0000196954
Arabidopsis thaliana	4	4	CH_ath_8	20	23	1.3372e-22
Beta vulgaris	Bvchr8.sca006	2	CH_bvu_16	22	49	0.0000000000000047319
Beta vulgaris	Bvchr8.sca006	5	CH_bvu_9	22	49	0.0000000000000047319
Chlamydomonas reinhardtii	chromosome_2	3	CH_cre_64	9	17	0.000105534
Citrus sinensis	scaffold00103	5	CH_csi_16	10	13	0.000000204341
Cucumis melo	CM3.5_scaffold00001	1	CH_cme_9	30	61	8.86638e-25
Cucumis melo	CM3.5_scaffold00001	2	CH_cme_8	30	60	9.19518e-25
Cucumis melo	CM3.5_scaffold00001	4	CH_cme_9	30	61	8.86638e-25
Cucumis melo	CM3.5_scaffold00001	5	CH_cme_7	32	65	2.41832e-26
Eucalyptus grandis	scaffold_5	4	CH_egr_4	67	113	4.50973e-45
Eucalyptus grandis	scaffold_4	5	CH_egr_18	61	119	2.71519e-35
Eucalyptus grandis	scaffold_5	5	CH_egr_5	68	116	5.98937e-45
Gossypium raimondii	Chr02	5	CH_gra_13	58	205	2.38719e-25
Malus domestica	10	1	CH_mdo_122	7	9	0.0000456761
Malus domestica	10	2	CH_mdo_130	8	12	0.0000217528
Malus domestica	10	5	CH_mdo_46	16	84	0.000434941
Malus domestica	5	5	CH_mdo_7	25	117	0.00000000212393
Oryza sativa ssp. japonica	6	6	CH_osa_178	20	130	0.00066472
Populus trichocarpa	Chr04	4	CH_ptr_16	32	53	7.68975e-25
Populus trichocarpa	Chr04	5	CH_ptr_19	32	53	1.35494e-24
Ricinus communis	30128	2	CH_rco_126	9	14	0.00000914507
Solanum lycopersicum	ch02	2	CH_sly_47	26	57	2.3038e-17
Solanum lycopersicum	ch02	5	CH_sly_35	26	57	2.3038e-17
Theobroma cacao	scaffold_5	2	CH_tca_204	9	14	0.0000112445
Zea mays	7	3	CH_zma_43	14	21	0.000000000154373
Zea mays	7	6	CH_zma_17	14	21	0.000000000154373

Available child term results

GO term	Description	Number of clusters
GO:0000155	phosphorelay sensor kinase activity	4
GO:0004674	protein serine/threonine kinase activity	416
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	5
GO:0004683	calmodulin-dependent protein kinase activity	6
GO:0004693	cyclin-dependent protein serine/threonine kinase activity	4
GO:0004707	MAP kinase activity	4
GO:0004709	MAP kinase kinase kinase activity	4
GO:0004713	protein tyrosine kinase activity	157

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V