Populus trichocarpa

The black cottonwood is a tree common to western parts of North America. Although closely related species are common in other parts of the world. This species has a couple features making it an interesting model organism for biology. The genome size is only 4x that of Arabidopsis. Techniques for high-throughput transformation are available, that in combination with the genome sequence become valuable tools to create transgenic plants. As the cottonwood can grow on marginal lands, where it is commonly used as windbreaks, it can also be used as a crop for second generation bio-fuels.

Publication:
The genome of black cottonwood, Populus trichocarpa.

Info and Links

Common name Populus trichocarpa
Cultivar/subspecies Not available
PLAZA identifier ptr
Source JGI v4.1
NCBI taxonomy 3694
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 1735, showing 20 records out of 34699 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
Potri.001G000400Potri.001G000400.51393516452-Chr01codingHOM05D006514ORTHO05D008138
Potri.001G000450Potri.001G000450.11468314997-Chr01codingHOM05D007587Orphan Gene
Potri.001G000500Potri.001G000500.14119643080-Chr01codingHOM05D000201ORTHO05D001601
Potri.001G000600Potri.001G000600.15073452527+Chr01codingHOM05D000201ORTHO05D001601
Potri.001G000700Potri.001G000700.26090664830-Chr01codingHOM05D004147ORTHO05D005606
Potri.001G000800Potri.001G000800.56621670183-Chr01codingHOM05D000141ORTHO05D004038
Potri.001G000900Potri.001G000900.28854091842-Chr01codingHOM05D004300ORTHO05D005171
Potri.001G001000Potri.001G001000.19346594283+Chr01codingHOM05D007298ORTHO05D009226
Potri.001G001100Potri.001G001100.19851299495+Chr01codingHOM05D000114ORTHO05D000075
Potri.001G001201Potri.001G001201.2101878103624+Chr01codingHOM05D004493ORTHO05D005117
Potri.001G001250Potri.001G001250.1104243105430+Chr01codingHOM05D004493ORTHO05D005117
Potri.001G001300Potri.001G001300.1106877109252-Chr01codingHOM05D002872ORTHO05D003204
Potri.001G001400Potri.001G001400.2109788111044+Chr01codingHOM05D004453ORTHO05D005375
Potri.001G001500Potri.001G001500.4115785116933+Chr01codingHOM05D000082ORTHO05D000038
Potri.001G001600Potri.001G001600.1118561122140-Chr01codingHOM05D000211ORTHO05D001399
Potri.001G001700Potri.001G001700.2125402129098-Chr01codingHOM05D000211ORTHO05D002682
Potri.001G002000Potri.001G002000.1133942137280-Chr01codingHOM05D000412ORTHO05D000429
Potri.001G002200Potri.001G002200.2138679142684-Chr01codingHOM05D000015ORTHO05D009900
Potri.001G002300Potri.001G002300.3147963151077+Chr01codingHOM05D000046ORTHO05D000457
Potri.001G002350Potri.001G002350.1151546151803+Chr01codingOrphan GeneOrphan Gene