Arabidopsis lyrata

Arabidopsis lyrata is, together with Arabidopsis thaliana, a member of the Arabidopsis genus. As the thaliana species is widely used as model organism within the green plants lineage, the sequencing of the lyrata species is expected to reveal important comparative genomic data with respect to genomic content, lifestyle differences, etc. The lyrate genome has approximately the same number of genes as the thaliana genome (33000 genes), but the genome itself is 50% larger, while the species only diverged approximately 5 million years ago.

Publication:
Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

Info and Links

Common name Arabidopsis lyrata
Cultivar/subspecies Not available
PLAZA identifier aly
Source JGI v2.1
NCBI taxonomy 59689
Mitochondrion Not available
Chloroplast Not available

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Annotations

Page 1 of 1554, showing 20 records out of 31073 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
AL1006U10010AL1006U10010.t16612012-scaffold_1006codingHOM05D001614ORTHO05D000988
AL1008U10010AL1008U10010.t1761145-scaffold_1008codingHOM05D000277ORTHO05D000214
AL100U10010AL100U10010.t147246660+scaffold_100codingHOM05D000153ORTHO05D000118
AL100U10020AL100U10020.t11962520790+scaffold_100codingHOM05D000190ORTHO05D000113
AL1010U10010AL1010U10010.t19051546+scaffold_1010codingHOM05D005476ORTHO05D006886
AL1010U10020AL1010U10020.t135243811+scaffold_1010codingHOM05D005281ORTHO05D006351
AL1014U10010AL1014U10010.t1152597-scaffold_1014codingHOM05D042753Orphan Gene
AL1017U10010AL1017U10010.t1601071+scaffold_1017codingHOM05D000027ORTHO05D008169
AL1025U10010AL1025U10010.t1102613+scaffold_1025codingOrphan GeneOrphan Gene
AL1031U10010AL1031U10010.t13411232+scaffold_1031codingHOM05D007965ORTHO05D010269
AL1031U10020AL1031U10020.t130153674-scaffold_1031codingHOM05D001516ORTHO05D001357
AL1032U10010AL1032U10010.t1243710-scaffold_1032codingHOM05D000018ORTHO05D001440
AL1033U10010AL1033U10010.t1201611+scaffold_1033codingHOM05D000309ORTHO05D010777
AL1033U10020AL1033U10020.t123663659+scaffold_1033codingHOM05D000309ORTHO05D000271
AL103U10020AL103U10020.t155067197+scaffold_103codingHOM05D000062ORTHO05D008040
AL103U10030AL103U10030.t11004810872-scaffold_103codingOrphan GeneOrphan Gene
AL103U10040AL103U10040.t11297914193-scaffold_103codingHOM05D006838ORTHO05D008915
AL103U10050AL103U10050.t11656317832+scaffold_103codingHOM05D004147ORTHO05D005606
AL103U10060AL103U10060.t11890519663+scaffold_103codingHOM05D000479ORTHO05D001656
AL1040U10010AL1040U10010.t16421327-scaffold_1040codingHOM05D003936ORTHO05D004747