Arabidopsis lyrata
Arabidopsis lyrata is, together with Arabidopsis thaliana, a member of the Arabidopsis genus. As the thaliana species is widely used as model organism within the green plants lineage, the sequencing of the lyrata species is expected to reveal important comparative genomic data with respect to genomic content, lifestyle differences, etc. The lyrate genome has approximately the same number of genes as the thaliana genome (33000 genes), but the genome itself is 50% larger, while the species only diverged approximately 5 million years ago.
Publication:
Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.
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Annotations
Page 1 of 1554, showing 20 records out of 31073 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Homologous gene family | Orthologous gene family |
---|---|---|---|---|---|---|---|---|
AL1006U10010 | AL1006U10010.t1 | 661 | 2012 | - | scaffold_1006 | coding | HOM05D001614 | ORTHO05D000988 |
AL1008U10010 | AL1008U10010.t1 | 76 | 1145 | - | scaffold_1008 | coding | HOM05D000277 | ORTHO05D000214 |
AL100U10010 | AL100U10010.t1 | 4724 | 6660 | + | scaffold_100 | coding | HOM05D000153 | ORTHO05D000118 |
AL100U10020 | AL100U10020.t1 | 19625 | 20790 | + | scaffold_100 | coding | HOM05D000190 | ORTHO05D000113 |
AL1010U10010 | AL1010U10010.t1 | 905 | 1546 | + | scaffold_1010 | coding | HOM05D005476 | ORTHO05D006886 |
AL1010U10020 | AL1010U10020.t1 | 3524 | 3811 | + | scaffold_1010 | coding | HOM05D005281 | ORTHO05D006351 |
AL1014U10010 | AL1014U10010.t1 | 152 | 597 | - | scaffold_1014 | coding | HOM05D042753 | Orphan Gene |
AL1017U10010 | AL1017U10010.t1 | 60 | 1071 | + | scaffold_1017 | coding | HOM05D000027 | ORTHO05D008169 |
AL1025U10010 | AL1025U10010.t1 | 102 | 613 | + | scaffold_1025 | coding | Orphan Gene | Orphan Gene |
AL1031U10010 | AL1031U10010.t1 | 341 | 1232 | + | scaffold_1031 | coding | HOM05D007965 | ORTHO05D010269 |
AL1031U10020 | AL1031U10020.t1 | 3015 | 3674 | - | scaffold_1031 | coding | HOM05D001516 | ORTHO05D001357 |
AL1032U10010 | AL1032U10010.t1 | 243 | 710 | - | scaffold_1032 | coding | HOM05D000018 | ORTHO05D001440 |
AL1033U10010 | AL1033U10010.t1 | 201 | 611 | + | scaffold_1033 | coding | HOM05D000309 | ORTHO05D010777 |
AL1033U10020 | AL1033U10020.t1 | 2366 | 3659 | + | scaffold_1033 | coding | HOM05D000309 | ORTHO05D000271 |
AL103U10020 | AL103U10020.t1 | 5506 | 7197 | + | scaffold_103 | coding | HOM05D000062 | ORTHO05D008040 |
AL103U10030 | AL103U10030.t1 | 10048 | 10872 | - | scaffold_103 | coding | Orphan Gene | Orphan Gene |
AL103U10040 | AL103U10040.t1 | 12979 | 14193 | - | scaffold_103 | coding | HOM05D006838 | ORTHO05D008915 |
AL103U10050 | AL103U10050.t1 | 16563 | 17832 | + | scaffold_103 | coding | HOM05D004147 | ORTHO05D005606 |
AL103U10060 | AL103U10060.t1 | 18905 | 19663 | + | scaffold_103 | coding | HOM05D000479 | ORTHO05D001656 |
AL1040U10010 | AL1040U10010.t1 | 642 | 1327 | - | scaffold_1040 | coding | HOM05D003936 | ORTHO05D004747 |