Functional clusters
Information
- Type Gene Ontology
- Description photosynthesis
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG01 | 3 | CH_aco_60 | 5 | 6 | 0.0000131669 |
| Aegilops tauschii | 1D | 3 | CH_ata_18 | 13 | 20 | 3.78465e-17 |
| Aegilops tauschii | 4D | 3 | CH_ata_60 | 12 | 38 | 0.00000000011019 |
| Arabidopsis thaliana | ChrC | 3 | CH_ath_4 | 30 | 69 | 3.81812e-48 |
| Brachypodium distachyon | Bd5 | 3 | CH_bdi_148 | 5 | 6 | 0.0000122314 |
| Brachypodium distachyon | Bd1 | 3 | CH_bdi_18 | 14 | 25 | 2.96796e-18 |
| Hordeum vulgare | chr2H | 3 | CH_hvu_234 | 10 | 79 | 0.00000767379 |
| Oryza sativa Kitaake | Chr8 | 3 | CH_osak_118 | 7 | 8 | 0.00000000118737 |
| Oryza sativa Kitaake | Chr12 | 3 | CH_osak_130 | 9 | 22 | 0.00000000509805 |
| Oryza sativa Kitaake | Chr2 | 3 | CH_osak_19 | 14 | 21 | 5.91844e-20 |
| Oryza sativa Kitaake | Chr9 | 3 | CH_osak_318 | 5 | 8 | 0.000106576 |
| Oryza sativa Kitaake | Chr1 | 3 | CH_osak_377 | 4 | 4 | 0.000220865 |
| Oropetium thomaeum | Chromosome_7 | 3 | CH_oth_34 | 11 | 42 | 0.00000000781051 |
| Oropetium thomaeum | contig_3 | 3 | CH_oth_69 | 10 | 49 | 0.00000144427 |
| Panicum hallii | Chr08 | 3 | CH_pha_16 | 14 | 27 | 1.49946e-18 |
| Physcomitrium patens | Chr21 | 3 | CH_ppa_105 | 5 | 6 | 0.0000675435 |
| Populus trichocarpa | Chr11 | 3 | CH_ptr_90 | 11 | 19 | 0.000000000000182383 |
| Sorghum bicolor | Chr03 | 3 | CH_sbi_77 | 12 | 57 | 0.000000000384827 |
| Setaria italica | scaffold_14 | 3 | CH_sit_12 | 23 | 78 | 1.14216e-25 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_361 | 5 | 7 | 0.0000737949 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_362 | 5 | 7 | 0.0000737949 |
| Selaginella moellendorffii | scaffold_175 | 3 | CH_smo_1 | 27 | 55 | 2.55184e-36 |
| Triticum aestivum | Chr4A | 3 | CH_tae_1090 | 7 | 23 | 0.00013072 |
| Triticum aestivum | Chr3B | 3 | CH_tae_122 | 13 | 22 | 1.65357e-16 |
| Triticum aestivum | Chr1D | 3 | CH_tae_172 | 10 | 12 | 0.0000000000000304262 |
| Triticum aestivum | Chr5D | 3 | CH_tae_279 | 9 | 13 | 0.0000000000353712 |
| Triticum aestivum | Chr5D | 3 | CH_tae_69 | 16 | 31 | 7.19248e-20 |
| Triticum aestivum | Chr5D | 3 | CH_tae_820 | 5 | 5 | 0.00000716918 |
| Triticum dicoccoides | 4A | 3 | CH_tdi_43 | 16 | 53 | 0.00000000000000195136 |
| Ananas comosus | LG01 | 4 | CH_aco_60 | 5 | 6 | 0.0000131669 |
| Aegilops tauschii | 1D | 4 | CH_ata_18 | 13 | 20 | 3.78465e-17 |
| Aegilops tauschii | 4D | 4 | CH_ata_60 | 12 | 38 | 0.00000000011019 |
| Arabidopsis thaliana | ChrC | 4 | CH_ath_4 | 30 | 69 | 3.81812e-48 |
| Brachypodium distachyon | Bd5 | 4 | CH_bdi_148 | 5 | 6 | 0.0000122314 |
| Brachypodium distachyon | Bd1 | 4 | CH_bdi_18 | 14 | 25 | 2.96796e-18 |
| Hordeum vulgare | chr2H | 4 | CH_hvu_234 | 10 | 79 | 0.00000767379 |
| Oryza sativa Kitaake | Chr8 | 4 | CH_osak_118 | 7 | 8 | 0.00000000118737 |
| Oryza sativa Kitaake | Chr12 | 4 | CH_osak_130 | 9 | 22 | 0.00000000509805 |
| Oryza sativa Kitaake | Chr2 | 4 | CH_osak_19 | 14 | 21 | 5.91844e-20 |
| Oryza sativa Kitaake | Chr9 | 4 | CH_osak_318 | 5 | 8 | 0.000106576 |
| Oryza sativa Kitaake | Chr1 | 4 | CH_osak_377 | 4 | 4 | 0.000220865 |
| Oropetium thomaeum | Chromosome_7 | 4 | CH_oth_34 | 11 | 42 | 0.00000000781051 |
| Oropetium thomaeum | contig_3 | 4 | CH_oth_69 | 10 | 49 | 0.00000144427 |
| Panicum hallii | Chr08 | 4 | CH_pha_16 | 14 | 27 | 1.49946e-18 |
| Physcomitrium patens | Chr21 | 4 | CH_ppa_105 | 5 | 6 | 0.0000675435 |
| Populus trichocarpa | Chr11 | 4 | CH_ptr_90 | 11 | 19 | 0.000000000000182383 |
| Sorghum bicolor | Chr03 | 4 | CH_sbi_77 | 12 | 57 | 0.000000000384827 |
| Setaria italica | scaffold_14 | 4 | CH_sit_12 | 23 | 78 | 1.14216e-25 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_361 | 5 | 7 | 0.0000737949 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_362 | 5 | 7 | 0.0000737949 |
| Selaginella moellendorffii | scaffold_175 | 4 | CH_smo_1 | 27 | 55 | 2.55184e-36 |
| Triticum aestivum | Chr4A | 4 | CH_tae_1090 | 7 | 23 | 0.00013072 |
| Triticum aestivum | Chr3B | 4 | CH_tae_122 | 13 | 22 | 1.65357e-16 |
| Triticum aestivum | Chr1D | 4 | CH_tae_172 | 10 | 12 | 0.0000000000000304262 |
| Triticum aestivum | Chr5D | 4 | CH_tae_279 | 9 | 13 | 0.0000000000353712 |
| Triticum aestivum | Chr5D | 4 | CH_tae_69 | 16 | 31 | 7.19248e-20 |
| Triticum aestivum | Chr5D | 4 | CH_tae_820 | 5 | 5 | 0.00000716918 |
| Triticum dicoccoides | 4A | 4 | CH_tdi_43 | 16 | 53 | 0.00000000000000195136 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009765 | photosynthesis, light harvesting | 62 |
| GO:0009768 | photosynthesis, light harvesting in photosystem I | 4 |
| GO:0009769 | photosynthesis, light harvesting in photosystem II | 14 |
| GO:0009772 | photosynthetic electron transport in photosystem II | 2 |
| GO:0009780 | photosynthetic NADP+ reduction | 2 |
| GO:0010206 | photosystem II repair | 2 |
| GO:0010270 | photosystem II oxygen evolving complex assembly | 8 |
| GO:0019684 | photosynthesis, light reaction | 4 |
| GO:0042549 | photosystem II stabilization | 4 |
| GO:1905157 | positive regulation of photosynthesis | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |