Functional clusters
Information
- Type Gene Ontology
- Description photosynthesis, light harvesting
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 3 | CH_aag_32 | 6 | 17 | 0.00000000479783 |
| Anthoceros agrestis | Sc2ySwM_368 | 3 | CH_aag_66 | 4 | 5 | 0.000000866938 |
| Aegilops tauschii | 6D | 3 | CH_ata_63 | 5 | 5 | 0.00000000020208 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 3 | CH_atr_95 | 4 | 4 | 0.0000000993443 |
| Brachypodium distachyon | Bd2 | 3 | CH_bdi_217 | 3 | 3 | 0.0000865942 |
| Calamus simplicifolius | scaffold147 | 3 | CH_calsi_142 | 3 | 3 | 0.0000197739 |
| Ceratophyllum demersum | 6 | 3 | CH_cde_50 | 4 | 4 | 0.00000106533 |
| Ceratophyllum demersum | 1 | 3 | CH_cde_8 | 7 | 8 | 0.000000000000118906 |
| Cenchrus purpureus | GWHAORA00000009 | 3 | CH_cpu_909 | 5 | 52 | 0.000701833 |
| Hordeum vulgare | chr5H | 3 | CH_hvu_46 | 6 | 6 | 0.000000000000152306 |
| Hordeum vulgare | chr6H | 3 | CH_hvu_47 | 6 | 6 | 0.000000000000152306 |
| Hordeum vulgare | chr1H | 3 | CH_hvu_94 | 5 | 6 | 0.000000000789244 |
| Lolium perenne | Lp_chr6_0 | 3 | CH_lpe_142 | 4 | 4 | 0.000000124407 |
| Lolium perenne | Lp_chr7_0.1 | 3 | CH_lpe_320 | 3 | 4 | 0.000129016 |
| Lolium perenne | Lp_chr5_0 | 3 | CH_lpe_321 | 3 | 4 | 0.000129016 |
| Musa acuminata | chr10 | 3 | CH_mac_210 | 3 | 4 | 0.000313787 |
| Micromonas commoda | Chr_02 | 3 | CH_mco_22 | 3 | 3 | 0.00053727 |
| Secale cereale | GWHASIY00000004 | 3 | CH_sce_537 | 3 | 3 | 0.000123478 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_29 | 8 | 8 | 2.37848e-19 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_370 | 3 | 3 | 0.0000837933 |
| Triticum aestivum | Chr5A | 3 | CH_tae_1252 | 3 | 3 | 0.000371932 |
| Triticum aestivum | Chr5D | 3 | CH_tae_1253 | 3 | 3 | 0.000371932 |
| Triticum aestivum | Chr6A | 3 | CH_tae_197 | 7 | 10 | 0.000000000000214763 |
| Triticum aestivum | Chr6B | 3 | CH_tae_223 | 6 | 6 | 0.00000000000122341 |
| Triticum aestivum | Chr1D | 3 | CH_tae_641 | 4 | 4 | 0.000000556618 |
| Triticum aestivum | Chr5B | 3 | CH_tae_642 | 4 | 4 | 0.000000556618 |
| Triticum dicoccoides | 6B | 3 | CH_tdi_15 | 9 | 13 | 1.05317e-18 |
| Triticum dicoccoides | 5B | 3 | CH_tdi_214 | 4 | 4 | 0.000000295425 |
| Triticum dicoccoides | 1A | 3 | CH_tdi_505 | 3 | 3 | 0.000207326 |
| Triticum dicoccoides | 6A | 3 | CH_tdi_71 | 6 | 7 | 0.00000000000406383 |
| Triticum turgidum | chr6B | 3 | CH_ttu_93 | 6 | 8 | 0.00000000000563464 |
| Anthoceros agrestis | Sc2ySwM_362 | 4 | CH_aag_32 | 6 | 17 | 0.00000000479783 |
| Anthoceros agrestis | Sc2ySwM_368 | 4 | CH_aag_66 | 4 | 5 | 0.000000866938 |
| Aegilops tauschii | 6D | 4 | CH_ata_63 | 5 | 5 | 0.00000000020208 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 4 | CH_atr_95 | 4 | 4 | 0.0000000993443 |
| Brachypodium distachyon | Bd2 | 4 | CH_bdi_217 | 3 | 3 | 0.0000865942 |
| Calamus simplicifolius | scaffold147 | 4 | CH_calsi_142 | 3 | 3 | 0.0000197739 |
| Ceratophyllum demersum | 6 | 4 | CH_cde_50 | 4 | 4 | 0.00000106533 |
| Ceratophyllum demersum | 1 | 4 | CH_cde_8 | 7 | 8 | 0.000000000000118906 |
| Cenchrus purpureus | GWHAORA00000009 | 4 | CH_cpu_909 | 5 | 52 | 0.000701833 |
| Hordeum vulgare | chr5H | 4 | CH_hvu_46 | 6 | 6 | 0.000000000000152306 |
| Hordeum vulgare | chr6H | 4 | CH_hvu_47 | 6 | 6 | 0.000000000000152306 |
| Hordeum vulgare | chr1H | 4 | CH_hvu_94 | 5 | 6 | 0.000000000789244 |
| Lolium perenne | Lp_chr6_0 | 4 | CH_lpe_142 | 4 | 4 | 0.000000124407 |
| Lolium perenne | Lp_chr7_0.1 | 4 | CH_lpe_320 | 3 | 4 | 0.000129016 |
| Lolium perenne | Lp_chr5_0 | 4 | CH_lpe_321 | 3 | 4 | 0.000129016 |
| Musa acuminata | chr10 | 4 | CH_mac_210 | 3 | 4 | 0.000313787 |
| Micromonas commoda | Chr_02 | 4 | CH_mco_22 | 3 | 3 | 0.00053727 |
| Secale cereale | GWHASIY00000004 | 4 | CH_sce_537 | 3 | 3 | 0.000123478 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_29 | 8 | 8 | 2.37848e-19 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_370 | 3 | 3 | 0.0000837933 |
| Triticum aestivum | Chr5A | 4 | CH_tae_1252 | 3 | 3 | 0.000371932 |
| Triticum aestivum | Chr5D | 4 | CH_tae_1253 | 3 | 3 | 0.000371932 |
| Triticum aestivum | Chr6A | 4 | CH_tae_197 | 7 | 10 | 0.000000000000214763 |
| Triticum aestivum | Chr6B | 4 | CH_tae_223 | 6 | 6 | 0.00000000000122341 |
| Triticum aestivum | Chr1D | 4 | CH_tae_641 | 4 | 4 | 0.000000556618 |
| Triticum aestivum | Chr5B | 4 | CH_tae_642 | 4 | 4 | 0.000000556618 |
| Triticum dicoccoides | 6B | 4 | CH_tdi_15 | 9 | 13 | 1.05317e-18 |
| Triticum dicoccoides | 5B | 4 | CH_tdi_214 | 4 | 4 | 0.000000295425 |
| Triticum dicoccoides | 1A | 4 | CH_tdi_505 | 3 | 3 | 0.000207326 |
| Triticum dicoccoides | 6A | 4 | CH_tdi_71 | 6 | 7 | 0.00000000000406383 |
| Triticum turgidum | chr6B | 4 | CH_ttu_93 | 6 | 8 | 0.00000000000563464 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009768 | photosynthesis, light harvesting in photosystem I | 4 |
| GO:0009769 | photosynthesis, light harvesting in photosystem II | 14 |
| GO:0010206 | photosystem II repair | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |