Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza brachyantha 3 1 CH_obr_266 5 45 0.000423116
Oryza sativa ssp. indica Chr3 1 CH_osaindica_356 5 51 0.000455255
Oropetium thomaeum Chromosome_4 1 CH_oth_177 6 73 0.000183218
Oryza brachyantha 3 2 CH_obr_266 5 45 0.000423116
Oryza sativa ssp. indica Chr3 2 CH_osaindica_356 5 51 0.000455255
Oropetium thomaeum Chromosome_4 2 CH_oth_177 6 73 0.000183218

Available child term results

Ontology identifier Description Number of clusters
21.4.1.1 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities 28
21.4.1.1.1 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.classical arabinogalactan protein 4
21.4.1.1.2 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.lysine-rich arabinogalactan protein 2
21.4.1.1.3 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.Fasciclin-type arabinogalactan protein (FLA) 20
21.4.1.1.4 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.Xylogen-type arabinogalactan protein (XYP/XYLP) 80
21.4.1.1.5.1 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.arabinogalactan protein glycosylation.hydroxyproline O-galactosyltransferase (GALT) 4
21.4.1.1.5.2 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.arabinogalactan protein glycosylation.hydroxyproline-O-galactosyltransferase (HPGT) 2
21.4.1.2.1 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.proline-rich protein activities.glycoprotein 6
21.4.1.3.3.1 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.extensin activities.extensin glycosylation.extensin serine O-alpha-galactosyltransferase 6
21.4.1.3.3.2 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.extensin activities.extensin glycosylation.extensin beta-1,2-arabinosyltransferase 4
21.4.1.3.3.3 Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.extensin activities.extensin glycosylation.extensin beta-1,3-arabinofuranosyltransferase (XEG113) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001