Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.Xylogen-type arabinogalactan protein (XYP/XYLP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_07 | 1 | CH_aof_44 | 3 | 4 | 0.00000565565 |
| Asparagus officinalis | AsparagusV1_03 | 1 | CH_aof_54 | 3 | 7 | 0.0000494477 |
| Allium sativum | chr1 | 1 | CH_asa_34 | 7 | 13 | 2.19685e-16 |
| Aegilops tauschii | 5D | 1 | CH_ata_95 | 4 | 10 | 0.000000102536 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_343 | 3 | 16 | 0.000700613 |
| Calamus simplicifolius | scaffold224 | 1 | CH_calsi_90 | 3 | 3 | 0.000000567866 |
| Cenchrus purpureus | GWHAORA00000002 | 1 | CH_cpu_716 | 3 | 10 | 0.000264477 |
| Cenchrus purpureus | GWHAORA00000010 | 1 | CH_cpu_832 | 3 | 13 | 0.000629892 |
| Eragrostis curvula | 4 | 1 | CH_ecu_123 | 7 | 69 | 0.0000000000143569 |
| Elaeis guineensis | EG5.1_Chr1 | 1 | CH_egu_42 | 4 | 7 | 0.0000000637606 |
| Glycine max | Gm16 | 1 | CH_gma_49 | 8 | 72 | 0.000000000000658961 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_65 | 5 | 10 | 0.0000000000316944 |
| Lolium perenne | Lp_chr4_0 | 1 | CH_lpe_42 | 5 | 14 | 0.0000000000206054 |
| Lolium perenne | Lp_chr2_0 | 1 | CH_lpe_424 | 3 | 24 | 0.000894513 |
| Musa acuminata | chr02 | 1 | CH_mac_36 | 4 | 4 | 0.0000000032937 |
| Oryza alta | GWHAZTO00000019 | 1 | CH_oal_177 | 4 | 12 | 0.000000153504 |
| Oryza brachyantha | 7 | 1 | CH_obr_40 | 5 | 11 | 0.000000000132277 |
| Oryza sativa ssp. indica | Chr7 | 1 | CH_osaindica_103 | 4 | 11 | 0.000000136421 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_160 | 4 | 9 | 0.0000000673918 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_119 | 4 | 12 | 0.000000218561 |
| Oropetium thomaeum | Chromosome_7 | 1 | CH_oth_170 | 3 | 8 | 0.000121556 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_253 | 3 | 3 | 0.00000485607 |
| Sorghum bicolor | Chr02 | 1 | CH_sbi_397 | 3 | 12 | 0.000412452 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_132 | 5 | 12 | 0.00000000108209 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_372 | 3 | 3 | 0.00000629345 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_10 | 13 | 14 | 2.18166e-36 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_231 | 6 | 9 | 0.000000000000573444 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_987 | 3 | 4 | 0.0000776453 |
| Setaria italica | scaffold_2 | 1 | CH_sit_422 | 3 | 15 | 0.000504511 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_222 | 3 | 3 | 0.00000289388 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_272 | 3 | 5 | 0.0000289205 |
| Saccharum spontaneum | Chr1D | 1 | CH_ssp_704 | 3 | 6 | 0.0000767038 |
| Setaria viridis | Chr_02 | 1 | CH_svi_479 | 3 | 17 | 0.000791792 |
| Triticum aestivum | Chr5D | 1 | CH_tae_192 | 6 | 10 | 0.000000000000486891 |
| Triticum aestivum | Chr5A | 1 | CH_tae_76 | 8 | 13 | 7.19215e-19 |
| Triticum aestivum | Chr5B | 1 | CH_tae_91 | 8 | 17 | 1.35616e-17 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_162 | 5 | 25 | 0.0000000438135 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_77 | 5 | 6 | 0.00000000000497845 |
| Triticum turgidum | chr5B | 1 | CH_ttu_52 | 6 | 10 | 0.0000000000000416627 |
| Triticum turgidum | chr5A | 1 | CH_ttu_92 | 5 | 8 | 0.0000000000323237 |
| Asparagus officinalis | AsparagusV1_07 | 2 | CH_aof_44 | 3 | 4 | 0.00000565565 |
| Asparagus officinalis | AsparagusV1_03 | 2 | CH_aof_54 | 3 | 7 | 0.0000494477 |
| Allium sativum | chr1 | 2 | CH_asa_34 | 7 | 13 | 2.19685e-16 |
| Aegilops tauschii | 5D | 2 | CH_ata_95 | 4 | 10 | 0.000000102536 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_343 | 3 | 16 | 0.000700613 |
| Calamus simplicifolius | scaffold224 | 2 | CH_calsi_90 | 3 | 3 | 0.000000567866 |
| Cenchrus purpureus | GWHAORA00000002 | 2 | CH_cpu_716 | 3 | 10 | 0.000264477 |
| Cenchrus purpureus | GWHAORA00000010 | 2 | CH_cpu_832 | 3 | 13 | 0.000629892 |
| Eragrostis curvula | 4 | 2 | CH_ecu_123 | 7 | 69 | 0.0000000000143569 |
| Elaeis guineensis | EG5.1_Chr1 | 2 | CH_egu_42 | 4 | 7 | 0.0000000637606 |
| Glycine max | Gm16 | 2 | CH_gma_49 | 8 | 72 | 0.000000000000658961 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_65 | 5 | 10 | 0.0000000000316944 |
| Lolium perenne | Lp_chr4_0 | 2 | CH_lpe_42 | 5 | 14 | 0.0000000000206054 |
| Lolium perenne | Lp_chr2_0 | 2 | CH_lpe_424 | 3 | 24 | 0.000894513 |
| Musa acuminata | chr02 | 2 | CH_mac_36 | 4 | 4 | 0.0000000032937 |
| Oryza alta | GWHAZTO00000019 | 2 | CH_oal_177 | 4 | 12 | 0.000000153504 |
| Oryza brachyantha | 7 | 2 | CH_obr_40 | 5 | 11 | 0.000000000132277 |
| Oryza sativa ssp. indica | Chr7 | 2 | CH_osaindica_103 | 4 | 11 | 0.000000136421 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_160 | 4 | 9 | 0.0000000673918 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_119 | 4 | 12 | 0.000000218561 |
| Oropetium thomaeum | Chromosome_7 | 2 | CH_oth_170 | 3 | 8 | 0.000121556 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_253 | 3 | 3 | 0.00000485607 |
| Sorghum bicolor | Chr02 | 2 | CH_sbi_397 | 3 | 12 | 0.000412452 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_132 | 5 | 12 | 0.00000000108209 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_372 | 3 | 3 | 0.00000629345 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_10 | 13 | 14 | 2.18166e-36 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_231 | 6 | 9 | 0.000000000000573444 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_987 | 3 | 4 | 0.0000776453 |
| Setaria italica | scaffold_2 | 2 | CH_sit_422 | 3 | 15 | 0.000504511 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_222 | 3 | 3 | 0.00000289388 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_272 | 3 | 5 | 0.0000289205 |
| Saccharum spontaneum | Chr1D | 2 | CH_ssp_704 | 3 | 6 | 0.0000767038 |
| Setaria viridis | Chr_02 | 2 | CH_svi_479 | 3 | 17 | 0.000791792 |
| Triticum aestivum | Chr5D | 2 | CH_tae_192 | 6 | 10 | 0.000000000000486891 |
| Triticum aestivum | Chr5A | 2 | CH_tae_76 | 8 | 13 | 7.19215e-19 |
| Triticum aestivum | Chr5B | 2 | CH_tae_91 | 8 | 17 | 1.35616e-17 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_162 | 5 | 25 | 0.0000000438135 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_77 | 5 | 6 | 0.00000000000497845 |
| Triticum turgidum | chr5B | 2 | CH_ttu_52 | 6 | 10 | 0.0000000000000416627 |
| Triticum turgidum | chr5A | 2 | CH_ttu_92 | 5 | 8 | 0.0000000000323237 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |