Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ATL-subclass ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr2 1 CH_asa_192 6 28 0.000000103602
Allium sativum chr8 1 CH_asa_244 4 5 0.00000084742
Allium sativum chr3 1 CH_asa_564 3 3 0.00012876
Allium sativum chr7_2 1 CH_asa_584 4 15 0.00022891
Allium sativum chr3 1 CH_asa_856 4 20 0.000808217
Aegilops tauschii 3D 1 CH_ata_105 5 9 0.000000256573
Aegilops tauschii 7D 1 CH_ata_31 7 9 0.000000000000326046
Aegilops tauschii 7D 1 CH_ata_73 6 12 0.0000000039694
Arabidopsis thaliana Chr4 1 CH_ath_128 4 4 0.0000000905097
Arabidopsis thaliana Chr1 1 CH_ath_169 4 6 0.00000135537
Arabidopsis thaliana Chr2 1 CH_ath_284 3 3 0.0000865521
Brachypodium distachyon Bd2 1 CH_bdi_35 6 7 0.0000000000153532
Cenchrus purpureus GWHAORA00000013 1 CH_cpu_416 7 57 0.00000269305
Cenchrus purpureus GWHAORA00000004 1 CH_cpu_488 5 16 0.0000113796
Cenchrus purpureus GWHAORA00000005 1 CH_cpu_830 3 3 0.000614314
Cenchrus purpureus GWHAORA00000013 1 CH_cpu_831 3 3 0.000614314
Dioscorea dumetorum contig815 1 CH_ddu_238 3 3 0.000220937
Dioscorea dumetorum contig3 1 CH_ddu_239 3 3 0.000220937
Digitaria exilis Dexi_CM05836_chr01B 1 CH_dex_215 4 4 0.000000261144
Digitaria exilis Dexi_CM05836_chr04B 1 CH_dex_34 8 12 4.64616e-16
Digitaria exilis Dexi_CM05836_chr01A 1 CH_dex_476 3 3 0.000183851
Digitaria exilis Dexi_CM05836_chr04A 1 CH_dex_61 7 13 0.00000000000118703
Digitaria exilis Dexi_CM05836_chr05A 1 CH_dex_713 3 4 0.000734609
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_714 3 4 0.000734609
Eragrostis curvula Contig25 1 CH_ecu_325 4 4 0.000000533268
Eragrostis curvula 1 1 CH_ecu_48 11 34 5.71684e-18
Eragrostis curvula 1 1 CH_ecu_524 5 26 0.0000593613
Eragrostis curvula 3 1 CH_ecu_80 9 27 0.0000000000000351462
Elaeis guineensis EG5.1_Chr5 1 CH_egu_24 5 5 0.0000000021019
Hordeum vulgare chr7H 1 CH_hvu_201 4 5 0.00000255845
Hordeum vulgare chr7H 1 CH_hvu_39 9 28 0.0000000000000494802
Hordeum vulgare chr3H 1 CH_hvu_67 6 8 0.0000000000430638
Lolium perenne Lp_chr1_0 1 CH_lpe_238 4 12 0.0000449054
Lolium perenne Lp_chr6_0 1 CH_lpe_423 3 5 0.000846926
Lolium perenne Lp_chr3_0 1 CH_lpe_66 6 15 0.00000000080339
Magnolia biondii Chr09 1 CH_mbi_650 3 5 0.000827282
Magnolia biondii Chr14 1 CH_mbi_79 6 11 0.0000000000641714
Miscanthus sinensis Chr07 1 CH_msi_258 5 13 0.00000564673
Miscanthus sinensis Chr06 1 CH_msi_338 4 7 0.000066893
Miscanthus sinensis Chr18 1 CH_msi_58 7 12 0.0000000000183919
Oryza alta GWHAZTO00000017 1 CH_oal_193 4 4 0.000000398552
Oryza alta GWHAZTO00000014 1 CH_oal_240 5 15 0.00000164499
Oryza alta GWHAZTO00000002 1 CH_oal_616 3 3 0.000284569
Oryza alta GWHAZTO00000002 1 CH_oal_79 6 12 0.000000000701853
Oryza brachyantha 2 1 CH_obr_153 3 4 0.0000415875
Oryza sativa ssp. indica Chr2 1 CH_osaindica_254 3 3 0.0000992997
Oryza sativa ssp. indica Chr6 1 CH_osaindica_387 4 21 0.000768979
Oryza sativa Kitaake Chr2 1 CH_osak_107 6 10 0.000000000796538
Oryza sativa Kitaake Chr1 1 CH_osak_130 5 6 0.0000000108402
Oryza sativa Kitaake Chr2 1 CH_osak_153 5 7 0.0000000378728
Oryza sativa Kitaake Chr6 1 CH_osak_336 5 27 0.000140478
Oryza sativa ssp. japonica chr02 1 CH_osa_185 4 8 0.0000250548
Oryza sativa ssp. japonica chr02 1 CH_osa_57 6 11 0.000000000464231
Oropetium thomaeum Chromosome_1 1 CH_oth_220 3 3 0.000301848
Phyllostachys edulis hic_scaffold_8 1 CH_ped_198 5 11 0.00000239803
Phyllostachys edulis hic_scaffold_16 1 CH_ped_235 4 5 0.0000104659
Phyllostachys edulis hic_scaffold_3 1 CH_ped_497 3 3 0.000830224
Panicum hallii Chr01 1 CH_pha_121 6 16 0.0000000590876
Panicum hallii Chr04 1 CH_pha_31 9 24 0.00000000000011993
Panicum hallii Chr01 1 CH_pha_388 3 3 0.000536912
Populus trichocarpa Chr10 1 CH_ptr_212 4 4 0.000000784028
Sorghum bicolor Chr10 1 CH_sbi_129 6 18 0.0000000729595
Sorghum bicolor Chr04 1 CH_sbi_130 6 18 0.0000000729595
Sorghum bicolor Chr04 1 CH_sbi_396 3 3 0.000392787
Secale cereale GWHASIY00000007 1 CH_sce_114 8 24 0.000000000176782
Secale cereale GWHASIY00000006 1 CH_sce_305 5 9 0.0000012925
Secale cereale GWHASIY00000003 1 CH_sce_42 8 9 0.00000000000000224783
Sequoiadendron giganteum chr1 1 CH_sgi_297 5 6 0.0000000000510142
Sequoiadendron giganteum chr9 1 CH_sgi_646 4 11 0.00000409963
Sequoiadendron giganteum chr4 1 CH_sgi_983 3 4 0.000070588
Setaria italica scaffold_4 1 CH_sit_180 5 11 0.000000719143
Setaria italica scaffold_1 1 CH_sit_267 5 22 0.0000402108
Setaria italica scaffold_1 1 CH_sit_408 3 3 0.000355275
Solanum lycopersicum SL4.0ch11 1 CH_sly_106 5 5 0.000000000795614
Setaria viridis Chr_01 1 CH_svi_142 6 20 0.0000000846956
Setaria viridis Chr_01 1 CH_svi_388 6 71 0.000287885
Setaria viridis Chr_04 1 CH_svi_392 4 12 0.000297182
Triticum aestivum Chr7D 1 CH_tae_105 8 8 2.68775e-16
Triticum aestivum Chr3D 1 CH_tae_162 7 7 0.000000000000102257
Triticum aestivum Chr3B 1 CH_tae_253 6 6 0.0000000000387666
Triticum aestivum Chr7B 1 CH_tae_259 8 21 0.0000000000530544
Triticum aestivum Chr7B 1 CH_tae_306 6 7 0.00000000027075
Triticum aestivum Chr3A 1 CH_tae_514 5 6 0.0000000876754
Triticum aestivum Chr7A 1 CH_tae_66 11 17 5.8284e-20
Triticum aestivum Chr7A 1 CH_tae_758 5 10 0.00000364985
Triticum aestivum Chr7D 1 CH_tae_97 10 18 7.8876e-17
Triticum dicoccoides 7B 1 CH_tdi_109 6 10 0.000000000929619
Triticum dicoccoides 3A 1 CH_tdi_231 4 4 0.00000113505
Triticum dicoccoides 3B 1 CH_tdi_232 4 4 0.00000113505
Triticum dicoccoides 7A 1 CH_tdi_434 4 9 0.000141872
Triticum dicoccoides 7B 1 CH_tdi_563 4 12 0.000554672
Triticum turgidum chr7B 1 CH_ttu_178 6 13 0.0000000106667
Triticum turgidum chr3A 1 CH_ttu_216 5 7 0.000000062441
Triticum turgidum chr7A 1 CH_ttu_233 5 8 0.000000166214
Triticum turgidum chr7A 1 CH_ttu_371 5 14 0.0000058792
Triticum turgidum chr3B 1 CH_ttu_436 4 6 0.0000209877
Triticum turgidum chr7B 1 CH_ttu_437 4 6 0.0000209877
Zea mays B73 5 1 CH_zma_118 4 5 0.00000693473
Zea mays B73 9 1 CH_zma_54 6 12 0.00000000709517
Allium sativum chr2 2 CH_asa_192 6 28 0.000000103602
Allium sativum chr8 2 CH_asa_244 4 5 0.00000084742
Allium sativum chr3 2 CH_asa_564 3 3 0.00012876
Allium sativum chr7_2 2 CH_asa_584 4 15 0.00022891
Allium sativum chr3 2 CH_asa_856 4 20 0.000808217
Aegilops tauschii 3D 2 CH_ata_105 5 9 0.000000256573
Aegilops tauschii 7D 2 CH_ata_31 7 9 0.000000000000326046
Aegilops tauschii 7D 2 CH_ata_73 6 12 0.0000000039694
Arabidopsis thaliana Chr4 2 CH_ath_128 4 4 0.0000000905097
Arabidopsis thaliana Chr1 2 CH_ath_169 4 6 0.00000135537
Arabidopsis thaliana Chr2 2 CH_ath_284 3 3 0.0000865521
Brachypodium distachyon Bd2 2 CH_bdi_35 6 7 0.0000000000153532
Cenchrus purpureus GWHAORA00000013 2 CH_cpu_416 7 57 0.00000269305
Cenchrus purpureus GWHAORA00000004 2 CH_cpu_488 5 16 0.0000113796
Cenchrus purpureus GWHAORA00000005 2 CH_cpu_830 3 3 0.000614314
Cenchrus purpureus GWHAORA00000013 2 CH_cpu_831 3 3 0.000614314
Dioscorea dumetorum contig815 2 CH_ddu_238 3 3 0.000220937
Dioscorea dumetorum contig3 2 CH_ddu_239 3 3 0.000220937
Digitaria exilis Dexi_CM05836_chr01B 2 CH_dex_215 4 4 0.000000261144
Digitaria exilis Dexi_CM05836_chr04B 2 CH_dex_34 8 12 4.64616e-16
Digitaria exilis Dexi_CM05836_chr01A 2 CH_dex_476 3 3 0.000183851
Digitaria exilis Dexi_CM05836_chr04A 2 CH_dex_61 7 13 0.00000000000118703
Digitaria exilis Dexi_CM05836_chr05A 2 CH_dex_713 3 4 0.000734609
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_714 3 4 0.000734609
Eragrostis curvula Contig25 2 CH_ecu_325 4 4 0.000000533268
Eragrostis curvula 1 2 CH_ecu_48 11 34 5.71684e-18
Eragrostis curvula 1 2 CH_ecu_524 5 26 0.0000593613
Eragrostis curvula 3 2 CH_ecu_80 9 27 0.0000000000000351462
Elaeis guineensis EG5.1_Chr5 2 CH_egu_24 5 5 0.0000000021019
Hordeum vulgare chr7H 2 CH_hvu_201 4 5 0.00000255845
Hordeum vulgare chr7H 2 CH_hvu_39 9 28 0.0000000000000494802
Hordeum vulgare chr3H 2 CH_hvu_67 6 8 0.0000000000430638
Lolium perenne Lp_chr1_0 2 CH_lpe_238 4 12 0.0000449054
Lolium perenne Lp_chr6_0 2 CH_lpe_423 3 5 0.000846926
Lolium perenne Lp_chr3_0 2 CH_lpe_66 6 15 0.00000000080339
Magnolia biondii Chr09 2 CH_mbi_650 3 5 0.000827282
Magnolia biondii Chr14 2 CH_mbi_79 6 11 0.0000000000641714
Miscanthus sinensis Chr07 2 CH_msi_258 5 13 0.00000564673
Miscanthus sinensis Chr06 2 CH_msi_338 4 7 0.000066893
Miscanthus sinensis Chr18 2 CH_msi_58 7 12 0.0000000000183919
Oryza alta GWHAZTO00000017 2 CH_oal_193 4 4 0.000000398552
Oryza alta GWHAZTO00000014 2 CH_oal_240 5 15 0.00000164499
Oryza alta GWHAZTO00000002 2 CH_oal_616 3 3 0.000284569
Oryza alta GWHAZTO00000002 2 CH_oal_79 6 12 0.000000000701853
Oryza brachyantha 2 2 CH_obr_153 3 4 0.0000415875
Oryza sativa ssp. indica Chr2 2 CH_osaindica_254 3 3 0.0000992997
Oryza sativa ssp. indica Chr6 2 CH_osaindica_387 4 21 0.000768979
Oryza sativa Kitaake Chr2 2 CH_osak_107 6 10 0.000000000796538
Oryza sativa Kitaake Chr1 2 CH_osak_130 5 6 0.0000000108402
Oryza sativa Kitaake Chr2 2 CH_osak_153 5 7 0.0000000378728
Oryza sativa Kitaake Chr6 2 CH_osak_336 5 27 0.000140478
Oryza sativa ssp. japonica chr02 2 CH_osa_185 4 8 0.0000250548
Oryza sativa ssp. japonica chr02 2 CH_osa_57 6 11 0.000000000464231
Oropetium thomaeum Chromosome_1 2 CH_oth_220 3 3 0.000301848
Phyllostachys edulis hic_scaffold_8 2 CH_ped_198 5 11 0.00000239803
Phyllostachys edulis hic_scaffold_16 2 CH_ped_235 4 5 0.0000104659
Phyllostachys edulis hic_scaffold_3 2 CH_ped_497 3 3 0.000830224
Panicum hallii Chr01 2 CH_pha_121 6 16 0.0000000590876
Panicum hallii Chr04 2 CH_pha_31 9 24 0.00000000000011993
Panicum hallii Chr01 2 CH_pha_388 3 3 0.000536912
Populus trichocarpa Chr10 2 CH_ptr_212 4 4 0.000000784028
Sorghum bicolor Chr10 2 CH_sbi_129 6 18 0.0000000729595
Sorghum bicolor Chr04 2 CH_sbi_130 6 18 0.0000000729595
Sorghum bicolor Chr04 2 CH_sbi_396 3 3 0.000392787
Secale cereale GWHASIY00000007 2 CH_sce_114 8 24 0.000000000176782
Secale cereale GWHASIY00000006 2 CH_sce_305 5 9 0.0000012925
Secale cereale GWHASIY00000003 2 CH_sce_42 8 9 0.00000000000000224783
Sequoiadendron giganteum chr1 2 CH_sgi_297 5 6 0.0000000000510142
Sequoiadendron giganteum chr9 2 CH_sgi_646 4 11 0.00000409963
Sequoiadendron giganteum chr4 2 CH_sgi_983 3 4 0.000070588
Setaria italica scaffold_4 2 CH_sit_180 5 11 0.000000719143
Setaria italica scaffold_1 2 CH_sit_267 5 22 0.0000402108
Setaria italica scaffold_1 2 CH_sit_408 3 3 0.000355275
Solanum lycopersicum SL4.0ch11 2 CH_sly_106 5 5 0.000000000795614
Setaria viridis Chr_01 2 CH_svi_142 6 20 0.0000000846956
Setaria viridis Chr_01 2 CH_svi_388 6 71 0.000287885
Setaria viridis Chr_04 2 CH_svi_392 4 12 0.000297182
Triticum aestivum Chr7D 2 CH_tae_105 8 8 2.68775e-16
Triticum aestivum Chr3D 2 CH_tae_162 7 7 0.000000000000102257
Triticum aestivum Chr3B 2 CH_tae_253 6 6 0.0000000000387666
Triticum aestivum Chr7B 2 CH_tae_259 8 21 0.0000000000530544
Triticum aestivum Chr7B 2 CH_tae_306 6 7 0.00000000027075
Triticum aestivum Chr3A 2 CH_tae_514 5 6 0.0000000876754
Triticum aestivum Chr7A 2 CH_tae_66 11 17 5.8284e-20
Triticum aestivum Chr7A 2 CH_tae_758 5 10 0.00000364985
Triticum aestivum Chr7D 2 CH_tae_97 10 18 7.8876e-17
Triticum dicoccoides 7B 2 CH_tdi_109 6 10 0.000000000929619
Triticum dicoccoides 3A 2 CH_tdi_231 4 4 0.00000113505
Triticum dicoccoides 3B 2 CH_tdi_232 4 4 0.00000113505
Triticum dicoccoides 7A 2 CH_tdi_434 4 9 0.000141872
Triticum dicoccoides 7B 2 CH_tdi_563 4 12 0.000554672
Triticum turgidum chr7B 2 CH_ttu_178 6 13 0.0000000106667
Triticum turgidum chr3A 2 CH_ttu_216 5 7 0.000000062441
Triticum turgidum chr7A 2 CH_ttu_233 5 8 0.000000166214
Triticum turgidum chr7A 2 CH_ttu_371 5 14 0.0000058792
Triticum turgidum chr3B 2 CH_ttu_436 4 6 0.0000209877
Triticum turgidum chr7B 2 CH_ttu_437 4 6 0.0000209877
Zea mays B73 5 2 CH_zma_118 4 5 0.00000693473
Zea mays B73 9 2 CH_zma_54 6 12 0.00000000709517

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001