Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ATL-subclass ligase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Allium sativum | chr2 | 1 | CH_asa_192 | 6 | 28 | 0.000000103602 |
Allium sativum | chr8 | 1 | CH_asa_244 | 4 | 5 | 0.00000084742 |
Allium sativum | chr3 | 1 | CH_asa_564 | 3 | 3 | 0.00012876 |
Allium sativum | chr7_2 | 1 | CH_asa_584 | 4 | 15 | 0.00022891 |
Allium sativum | chr3 | 1 | CH_asa_856 | 4 | 20 | 0.000808217 |
Aegilops tauschii | 3D | 1 | CH_ata_105 | 5 | 9 | 0.000000256573 |
Aegilops tauschii | 7D | 1 | CH_ata_31 | 7 | 9 | 0.000000000000326046 |
Aegilops tauschii | 7D | 1 | CH_ata_73 | 6 | 12 | 0.0000000039694 |
Arabidopsis thaliana | Chr4 | 1 | CH_ath_128 | 4 | 4 | 0.0000000905097 |
Arabidopsis thaliana | Chr1 | 1 | CH_ath_169 | 4 | 6 | 0.00000135537 |
Arabidopsis thaliana | Chr2 | 1 | CH_ath_284 | 3 | 3 | 0.0000865521 |
Brachypodium distachyon | Bd2 | 1 | CH_bdi_35 | 6 | 7 | 0.0000000000153532 |
Cenchrus purpureus | GWHAORA00000013 | 1 | CH_cpu_416 | 7 | 57 | 0.00000269305 |
Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_488 | 5 | 16 | 0.0000113796 |
Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_830 | 3 | 3 | 0.000614314 |
Cenchrus purpureus | GWHAORA00000013 | 1 | CH_cpu_831 | 3 | 3 | 0.000614314 |
Dioscorea dumetorum | contig815 | 1 | CH_ddu_238 | 3 | 3 | 0.000220937 |
Dioscorea dumetorum | contig3 | 1 | CH_ddu_239 | 3 | 3 | 0.000220937 |
Digitaria exilis | Dexi_CM05836_chr01B | 1 | CH_dex_215 | 4 | 4 | 0.000000261144 |
Digitaria exilis | Dexi_CM05836_chr04B | 1 | CH_dex_34 | 8 | 12 | 4.64616e-16 |
Digitaria exilis | Dexi_CM05836_chr01A | 1 | CH_dex_476 | 3 | 3 | 0.000183851 |
Digitaria exilis | Dexi_CM05836_chr04A | 1 | CH_dex_61 | 7 | 13 | 0.00000000000118703 |
Digitaria exilis | Dexi_CM05836_chr05A | 1 | CH_dex_713 | 3 | 4 | 0.000734609 |
Digitaria exilis | Dexi_CM05836_chr05B | 1 | CH_dex_714 | 3 | 4 | 0.000734609 |
Eragrostis curvula | Contig25 | 1 | CH_ecu_325 | 4 | 4 | 0.000000533268 |
Eragrostis curvula | 1 | 1 | CH_ecu_48 | 11 | 34 | 5.71684e-18 |
Eragrostis curvula | 1 | 1 | CH_ecu_524 | 5 | 26 | 0.0000593613 |
Eragrostis curvula | 3 | 1 | CH_ecu_80 | 9 | 27 | 0.0000000000000351462 |
Elaeis guineensis | EG5.1_Chr5 | 1 | CH_egu_24 | 5 | 5 | 0.0000000021019 |
Hordeum vulgare | chr7H | 1 | CH_hvu_201 | 4 | 5 | 0.00000255845 |
Hordeum vulgare | chr7H | 1 | CH_hvu_39 | 9 | 28 | 0.0000000000000494802 |
Hordeum vulgare | chr3H | 1 | CH_hvu_67 | 6 | 8 | 0.0000000000430638 |
Lolium perenne | Lp_chr1_0 | 1 | CH_lpe_238 | 4 | 12 | 0.0000449054 |
Lolium perenne | Lp_chr6_0 | 1 | CH_lpe_423 | 3 | 5 | 0.000846926 |
Lolium perenne | Lp_chr3_0 | 1 | CH_lpe_66 | 6 | 15 | 0.00000000080339 |
Magnolia biondii | Chr09 | 1 | CH_mbi_650 | 3 | 5 | 0.000827282 |
Magnolia biondii | Chr14 | 1 | CH_mbi_79 | 6 | 11 | 0.0000000000641714 |
Miscanthus sinensis | Chr07 | 1 | CH_msi_258 | 5 | 13 | 0.00000564673 |
Miscanthus sinensis | Chr06 | 1 | CH_msi_338 | 4 | 7 | 0.000066893 |
Miscanthus sinensis | Chr18 | 1 | CH_msi_58 | 7 | 12 | 0.0000000000183919 |
Oryza alta | GWHAZTO00000017 | 1 | CH_oal_193 | 4 | 4 | 0.000000398552 |
Oryza alta | GWHAZTO00000014 | 1 | CH_oal_240 | 5 | 15 | 0.00000164499 |
Oryza alta | GWHAZTO00000002 | 1 | CH_oal_616 | 3 | 3 | 0.000284569 |
Oryza alta | GWHAZTO00000002 | 1 | CH_oal_79 | 6 | 12 | 0.000000000701853 |
Oryza brachyantha | 2 | 1 | CH_obr_153 | 3 | 4 | 0.0000415875 |
Oryza sativa ssp. indica | Chr2 | 1 | CH_osaindica_254 | 3 | 3 | 0.0000992997 |
Oryza sativa ssp. indica | Chr6 | 1 | CH_osaindica_387 | 4 | 21 | 0.000768979 |
Oryza sativa Kitaake | Chr2 | 1 | CH_osak_107 | 6 | 10 | 0.000000000796538 |
Oryza sativa Kitaake | Chr1 | 1 | CH_osak_130 | 5 | 6 | 0.0000000108402 |
Oryza sativa Kitaake | Chr2 | 1 | CH_osak_153 | 5 | 7 | 0.0000000378728 |
Oryza sativa Kitaake | Chr6 | 1 | CH_osak_336 | 5 | 27 | 0.000140478 |
Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_185 | 4 | 8 | 0.0000250548 |
Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_57 | 6 | 11 | 0.000000000464231 |
Oropetium thomaeum | Chromosome_1 | 1 | CH_oth_220 | 3 | 3 | 0.000301848 |
Phyllostachys edulis | hic_scaffold_8 | 1 | CH_ped_198 | 5 | 11 | 0.00000239803 |
Phyllostachys edulis | hic_scaffold_16 | 1 | CH_ped_235 | 4 | 5 | 0.0000104659 |
Phyllostachys edulis | hic_scaffold_3 | 1 | CH_ped_497 | 3 | 3 | 0.000830224 |
Panicum hallii | Chr01 | 1 | CH_pha_121 | 6 | 16 | 0.0000000590876 |
Panicum hallii | Chr04 | 1 | CH_pha_31 | 9 | 24 | 0.00000000000011993 |
Panicum hallii | Chr01 | 1 | CH_pha_388 | 3 | 3 | 0.000536912 |
Populus trichocarpa | Chr10 | 1 | CH_ptr_212 | 4 | 4 | 0.000000784028 |
Sorghum bicolor | Chr10 | 1 | CH_sbi_129 | 6 | 18 | 0.0000000729595 |
Sorghum bicolor | Chr04 | 1 | CH_sbi_130 | 6 | 18 | 0.0000000729595 |
Sorghum bicolor | Chr04 | 1 | CH_sbi_396 | 3 | 3 | 0.000392787 |
Secale cereale | GWHASIY00000007 | 1 | CH_sce_114 | 8 | 24 | 0.000000000176782 |
Secale cereale | GWHASIY00000006 | 1 | CH_sce_305 | 5 | 9 | 0.0000012925 |
Secale cereale | GWHASIY00000003 | 1 | CH_sce_42 | 8 | 9 | 0.00000000000000224783 |
Sequoiadendron giganteum | chr1 | 1 | CH_sgi_297 | 5 | 6 | 0.0000000000510142 |
Sequoiadendron giganteum | chr9 | 1 | CH_sgi_646 | 4 | 11 | 0.00000409963 |
Sequoiadendron giganteum | chr4 | 1 | CH_sgi_983 | 3 | 4 | 0.000070588 |
Setaria italica | scaffold_4 | 1 | CH_sit_180 | 5 | 11 | 0.000000719143 |
Setaria italica | scaffold_1 | 1 | CH_sit_267 | 5 | 22 | 0.0000402108 |
Setaria italica | scaffold_1 | 1 | CH_sit_408 | 3 | 3 | 0.000355275 |
Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_106 | 5 | 5 | 0.000000000795614 |
Setaria viridis | Chr_01 | 1 | CH_svi_142 | 6 | 20 | 0.0000000846956 |
Setaria viridis | Chr_01 | 1 | CH_svi_388 | 6 | 71 | 0.000287885 |
Setaria viridis | Chr_04 | 1 | CH_svi_392 | 4 | 12 | 0.000297182 |
Triticum aestivum | Chr7D | 1 | CH_tae_105 | 8 | 8 | 2.68775e-16 |
Triticum aestivum | Chr3D | 1 | CH_tae_162 | 7 | 7 | 0.000000000000102257 |
Triticum aestivum | Chr3B | 1 | CH_tae_253 | 6 | 6 | 0.0000000000387666 |
Triticum aestivum | Chr7B | 1 | CH_tae_259 | 8 | 21 | 0.0000000000530544 |
Triticum aestivum | Chr7B | 1 | CH_tae_306 | 6 | 7 | 0.00000000027075 |
Triticum aestivum | Chr3A | 1 | CH_tae_514 | 5 | 6 | 0.0000000876754 |
Triticum aestivum | Chr7A | 1 | CH_tae_66 | 11 | 17 | 5.8284e-20 |
Triticum aestivum | Chr7A | 1 | CH_tae_758 | 5 | 10 | 0.00000364985 |
Triticum aestivum | Chr7D | 1 | CH_tae_97 | 10 | 18 | 7.8876e-17 |
Triticum dicoccoides | 7B | 1 | CH_tdi_109 | 6 | 10 | 0.000000000929619 |
Triticum dicoccoides | 3A | 1 | CH_tdi_231 | 4 | 4 | 0.00000113505 |
Triticum dicoccoides | 3B | 1 | CH_tdi_232 | 4 | 4 | 0.00000113505 |
Triticum dicoccoides | 7A | 1 | CH_tdi_434 | 4 | 9 | 0.000141872 |
Triticum dicoccoides | 7B | 1 | CH_tdi_563 | 4 | 12 | 0.000554672 |
Triticum turgidum | chr7B | 1 | CH_ttu_178 | 6 | 13 | 0.0000000106667 |
Triticum turgidum | chr3A | 1 | CH_ttu_216 | 5 | 7 | 0.000000062441 |
Triticum turgidum | chr7A | 1 | CH_ttu_233 | 5 | 8 | 0.000000166214 |
Triticum turgidum | chr7A | 1 | CH_ttu_371 | 5 | 14 | 0.0000058792 |
Triticum turgidum | chr3B | 1 | CH_ttu_436 | 4 | 6 | 0.0000209877 |
Triticum turgidum | chr7B | 1 | CH_ttu_437 | 4 | 6 | 0.0000209877 |
Zea mays B73 | 5 | 1 | CH_zma_118 | 4 | 5 | 0.00000693473 |
Zea mays B73 | 9 | 1 | CH_zma_54 | 6 | 12 | 0.00000000709517 |
Allium sativum | chr2 | 2 | CH_asa_192 | 6 | 28 | 0.000000103602 |
Allium sativum | chr8 | 2 | CH_asa_244 | 4 | 5 | 0.00000084742 |
Allium sativum | chr3 | 2 | CH_asa_564 | 3 | 3 | 0.00012876 |
Allium sativum | chr7_2 | 2 | CH_asa_584 | 4 | 15 | 0.00022891 |
Allium sativum | chr3 | 2 | CH_asa_856 | 4 | 20 | 0.000808217 |
Aegilops tauschii | 3D | 2 | CH_ata_105 | 5 | 9 | 0.000000256573 |
Aegilops tauschii | 7D | 2 | CH_ata_31 | 7 | 9 | 0.000000000000326046 |
Aegilops tauschii | 7D | 2 | CH_ata_73 | 6 | 12 | 0.0000000039694 |
Arabidopsis thaliana | Chr4 | 2 | CH_ath_128 | 4 | 4 | 0.0000000905097 |
Arabidopsis thaliana | Chr1 | 2 | CH_ath_169 | 4 | 6 | 0.00000135537 |
Arabidopsis thaliana | Chr2 | 2 | CH_ath_284 | 3 | 3 | 0.0000865521 |
Brachypodium distachyon | Bd2 | 2 | CH_bdi_35 | 6 | 7 | 0.0000000000153532 |
Cenchrus purpureus | GWHAORA00000013 | 2 | CH_cpu_416 | 7 | 57 | 0.00000269305 |
Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_488 | 5 | 16 | 0.0000113796 |
Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_830 | 3 | 3 | 0.000614314 |
Cenchrus purpureus | GWHAORA00000013 | 2 | CH_cpu_831 | 3 | 3 | 0.000614314 |
Dioscorea dumetorum | contig815 | 2 | CH_ddu_238 | 3 | 3 | 0.000220937 |
Dioscorea dumetorum | contig3 | 2 | CH_ddu_239 | 3 | 3 | 0.000220937 |
Digitaria exilis | Dexi_CM05836_chr01B | 2 | CH_dex_215 | 4 | 4 | 0.000000261144 |
Digitaria exilis | Dexi_CM05836_chr04B | 2 | CH_dex_34 | 8 | 12 | 4.64616e-16 |
Digitaria exilis | Dexi_CM05836_chr01A | 2 | CH_dex_476 | 3 | 3 | 0.000183851 |
Digitaria exilis | Dexi_CM05836_chr04A | 2 | CH_dex_61 | 7 | 13 | 0.00000000000118703 |
Digitaria exilis | Dexi_CM05836_chr05A | 2 | CH_dex_713 | 3 | 4 | 0.000734609 |
Digitaria exilis | Dexi_CM05836_chr05B | 2 | CH_dex_714 | 3 | 4 | 0.000734609 |
Eragrostis curvula | Contig25 | 2 | CH_ecu_325 | 4 | 4 | 0.000000533268 |
Eragrostis curvula | 1 | 2 | CH_ecu_48 | 11 | 34 | 5.71684e-18 |
Eragrostis curvula | 1 | 2 | CH_ecu_524 | 5 | 26 | 0.0000593613 |
Eragrostis curvula | 3 | 2 | CH_ecu_80 | 9 | 27 | 0.0000000000000351462 |
Elaeis guineensis | EG5.1_Chr5 | 2 | CH_egu_24 | 5 | 5 | 0.0000000021019 |
Hordeum vulgare | chr7H | 2 | CH_hvu_201 | 4 | 5 | 0.00000255845 |
Hordeum vulgare | chr7H | 2 | CH_hvu_39 | 9 | 28 | 0.0000000000000494802 |
Hordeum vulgare | chr3H | 2 | CH_hvu_67 | 6 | 8 | 0.0000000000430638 |
Lolium perenne | Lp_chr1_0 | 2 | CH_lpe_238 | 4 | 12 | 0.0000449054 |
Lolium perenne | Lp_chr6_0 | 2 | CH_lpe_423 | 3 | 5 | 0.000846926 |
Lolium perenne | Lp_chr3_0 | 2 | CH_lpe_66 | 6 | 15 | 0.00000000080339 |
Magnolia biondii | Chr09 | 2 | CH_mbi_650 | 3 | 5 | 0.000827282 |
Magnolia biondii | Chr14 | 2 | CH_mbi_79 | 6 | 11 | 0.0000000000641714 |
Miscanthus sinensis | Chr07 | 2 | CH_msi_258 | 5 | 13 | 0.00000564673 |
Miscanthus sinensis | Chr06 | 2 | CH_msi_338 | 4 | 7 | 0.000066893 |
Miscanthus sinensis | Chr18 | 2 | CH_msi_58 | 7 | 12 | 0.0000000000183919 |
Oryza alta | GWHAZTO00000017 | 2 | CH_oal_193 | 4 | 4 | 0.000000398552 |
Oryza alta | GWHAZTO00000014 | 2 | CH_oal_240 | 5 | 15 | 0.00000164499 |
Oryza alta | GWHAZTO00000002 | 2 | CH_oal_616 | 3 | 3 | 0.000284569 |
Oryza alta | GWHAZTO00000002 | 2 | CH_oal_79 | 6 | 12 | 0.000000000701853 |
Oryza brachyantha | 2 | 2 | CH_obr_153 | 3 | 4 | 0.0000415875 |
Oryza sativa ssp. indica | Chr2 | 2 | CH_osaindica_254 | 3 | 3 | 0.0000992997 |
Oryza sativa ssp. indica | Chr6 | 2 | CH_osaindica_387 | 4 | 21 | 0.000768979 |
Oryza sativa Kitaake | Chr2 | 2 | CH_osak_107 | 6 | 10 | 0.000000000796538 |
Oryza sativa Kitaake | Chr1 | 2 | CH_osak_130 | 5 | 6 | 0.0000000108402 |
Oryza sativa Kitaake | Chr2 | 2 | CH_osak_153 | 5 | 7 | 0.0000000378728 |
Oryza sativa Kitaake | Chr6 | 2 | CH_osak_336 | 5 | 27 | 0.000140478 |
Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_185 | 4 | 8 | 0.0000250548 |
Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_57 | 6 | 11 | 0.000000000464231 |
Oropetium thomaeum | Chromosome_1 | 2 | CH_oth_220 | 3 | 3 | 0.000301848 |
Phyllostachys edulis | hic_scaffold_8 | 2 | CH_ped_198 | 5 | 11 | 0.00000239803 |
Phyllostachys edulis | hic_scaffold_16 | 2 | CH_ped_235 | 4 | 5 | 0.0000104659 |
Phyllostachys edulis | hic_scaffold_3 | 2 | CH_ped_497 | 3 | 3 | 0.000830224 |
Panicum hallii | Chr01 | 2 | CH_pha_121 | 6 | 16 | 0.0000000590876 |
Panicum hallii | Chr04 | 2 | CH_pha_31 | 9 | 24 | 0.00000000000011993 |
Panicum hallii | Chr01 | 2 | CH_pha_388 | 3 | 3 | 0.000536912 |
Populus trichocarpa | Chr10 | 2 | CH_ptr_212 | 4 | 4 | 0.000000784028 |
Sorghum bicolor | Chr10 | 2 | CH_sbi_129 | 6 | 18 | 0.0000000729595 |
Sorghum bicolor | Chr04 | 2 | CH_sbi_130 | 6 | 18 | 0.0000000729595 |
Sorghum bicolor | Chr04 | 2 | CH_sbi_396 | 3 | 3 | 0.000392787 |
Secale cereale | GWHASIY00000007 | 2 | CH_sce_114 | 8 | 24 | 0.000000000176782 |
Secale cereale | GWHASIY00000006 | 2 | CH_sce_305 | 5 | 9 | 0.0000012925 |
Secale cereale | GWHASIY00000003 | 2 | CH_sce_42 | 8 | 9 | 0.00000000000000224783 |
Sequoiadendron giganteum | chr1 | 2 | CH_sgi_297 | 5 | 6 | 0.0000000000510142 |
Sequoiadendron giganteum | chr9 | 2 | CH_sgi_646 | 4 | 11 | 0.00000409963 |
Sequoiadendron giganteum | chr4 | 2 | CH_sgi_983 | 3 | 4 | 0.000070588 |
Setaria italica | scaffold_4 | 2 | CH_sit_180 | 5 | 11 | 0.000000719143 |
Setaria italica | scaffold_1 | 2 | CH_sit_267 | 5 | 22 | 0.0000402108 |
Setaria italica | scaffold_1 | 2 | CH_sit_408 | 3 | 3 | 0.000355275 |
Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_106 | 5 | 5 | 0.000000000795614 |
Setaria viridis | Chr_01 | 2 | CH_svi_142 | 6 | 20 | 0.0000000846956 |
Setaria viridis | Chr_01 | 2 | CH_svi_388 | 6 | 71 | 0.000287885 |
Setaria viridis | Chr_04 | 2 | CH_svi_392 | 4 | 12 | 0.000297182 |
Triticum aestivum | Chr7D | 2 | CH_tae_105 | 8 | 8 | 2.68775e-16 |
Triticum aestivum | Chr3D | 2 | CH_tae_162 | 7 | 7 | 0.000000000000102257 |
Triticum aestivum | Chr3B | 2 | CH_tae_253 | 6 | 6 | 0.0000000000387666 |
Triticum aestivum | Chr7B | 2 | CH_tae_259 | 8 | 21 | 0.0000000000530544 |
Triticum aestivum | Chr7B | 2 | CH_tae_306 | 6 | 7 | 0.00000000027075 |
Triticum aestivum | Chr3A | 2 | CH_tae_514 | 5 | 6 | 0.0000000876754 |
Triticum aestivum | Chr7A | 2 | CH_tae_66 | 11 | 17 | 5.8284e-20 |
Triticum aestivum | Chr7A | 2 | CH_tae_758 | 5 | 10 | 0.00000364985 |
Triticum aestivum | Chr7D | 2 | CH_tae_97 | 10 | 18 | 7.8876e-17 |
Triticum dicoccoides | 7B | 2 | CH_tdi_109 | 6 | 10 | 0.000000000929619 |
Triticum dicoccoides | 3A | 2 | CH_tdi_231 | 4 | 4 | 0.00000113505 |
Triticum dicoccoides | 3B | 2 | CH_tdi_232 | 4 | 4 | 0.00000113505 |
Triticum dicoccoides | 7A | 2 | CH_tdi_434 | 4 | 9 | 0.000141872 |
Triticum dicoccoides | 7B | 2 | CH_tdi_563 | 4 | 12 | 0.000554672 |
Triticum turgidum | chr7B | 2 | CH_ttu_178 | 6 | 13 | 0.0000000106667 |
Triticum turgidum | chr3A | 2 | CH_ttu_216 | 5 | 7 | 0.000000062441 |
Triticum turgidum | chr7A | 2 | CH_ttu_233 | 5 | 8 | 0.000000166214 |
Triticum turgidum | chr7A | 2 | CH_ttu_371 | 5 | 14 | 0.0000058792 |
Triticum turgidum | chr3B | 2 | CH_ttu_436 | 4 | 6 | 0.0000209877 |
Triticum turgidum | chr7B | 2 | CH_ttu_437 | 4 | 6 | 0.0000209877 |
Zea mays B73 | 5 | 2 | CH_zma_118 | 4 | 5 | 0.00000693473 |
Zea mays B73 | 9 | 2 | CH_zma_54 | 6 | 12 | 0.00000000709517 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |